[Bio BB] Implementation or software packages of suffix tree

Chia-Yu Su cysu at iis.sinica.edu.tw
Thu Sep 30 04:00:32 EDT 2004


I want to construct suffix trees to extract repeats from sequences.
I found several softwares from the web (by Dan Gusfield, Ting Chen, etc).
Has anyone used any recommended suffix tree software?
Are there any implementation or softwares of suffix trees which allows long sequence inputs and 
generate results in linear time?
Please give me some suggestions about suffix tree software and where to download the web.

Thanks a lot for your help!

Best regards,
Chia-Yu Su
Bioinformatics Program of 
Taiwan International Graduate Program
Academia Sinica, Taiwan

E-mail: cysu at iis.sinica.edu.tw
Phone: +886-2-27883799 ext. 2302
Fax: +886-2-27824814
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