[BiO BB] protein family databases (Interpro)

[Ann Loraine]

Dear Andrea,

This service would be of great use to me if it allowed me to transfer
amino acid sequences directly to your server and get back the results
directly (instead of via a Web page) in an easy-to-parse format, such
as XML.

Very best wishes,

Ann Loraine

On 10/16/05, Andrea Franceschini <atariml at gmail.com> wrote:
> We are developing a software to automatically retrive some family/domain's
> annotations of a set of proteins.
> In particular we are interested to identify the possible relations between
> the different families.
>
> To accomplish this task we are thinking to use Interpro as source for the
> annotations.
> What do you think about the parent/child  and  contains/found in   relations
> present in Interpro ?
>
> Do you have any suggestion about other databases that we should use ?
> Do you have any suggestion about other possible information that we could
> provide on a particular set of proteins (given us as input by the user)  ?
>
>
> Thankyou very much
> Andrea Franceschini
> University Politecnico of Milan (Italy)
>
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