[BiO BB] Protein sequence clustering program needed

Vered Caspi veredcc at bgumail.bgu.ac.il
Sun Sep 18 02:34:24 EDT 2005

We are using a local installation of MKDOM for protein clustering (to the 
level of conserved domains).
Vered Caspi, Ph.D.
Bioinformatics Support Unit, Head
National Institute for Biotechnology in the Negev
Building 39, room 214
Ben-Gurion University of the Negev
Beer-Sheva 84105, Israel

Email: veredcc at bgumail.bgu.ac.il
Tel: 08-6479034 054-7915969
Fax: 08-6472983


----- Original Message ----- 
From: "Iddo Friedberg" <idoerg at burnham.org>
To: "The general forum at Bioinformatics.Org" 
<bio_bulletin_board at bioinformatics.org>
Sent: Friday, September 16, 2005 10:56 PM
Subject: [BiO BB] Protein sequence clustering program needed

I need a protein sequence clustering program for a relatively low
sequence ID (30-40%), for a small (<=200) number of sequences. Ideas?




Iddo Friedberg, Ph.D.
The Burnham Institute
10901 N. Torrey Pines Rd.
La Jolla, CA 92037
Tel: (858) 646 3100 x3516
Fax: (858) 713 9930

Bioinformatics.Org general forum  -  BiO_Bulletin_Board at bioinformatics.org

More information about the BBB mailing list