[BiO BB] Protein sequence clustering program needed

[Vered Caspi]

Iddo,
We are using a local installation of MKDOM for protein clustering (to the 
level of conserved domains).
        Vered
______________________________________________________________
Vered Caspi, Ph.D.
Bioinformatics Support Unit, Head
National Institute for Biotechnology in the Negev
Building 39, room 214
Ben-Gurion University of the Negev
Beer-Sheva 84105, Israel

Email: veredcc at bgumail.bgu.ac.il
Tel: 08-6479034 054-7915969
Fax: 08-6472983

http://bioinfo.bgu.ac.il
______________________________________________________________

----- Original Message ----- 
From: "Iddo Friedberg" <idoerg at burnham.org>
To: "The general forum at Bioinformatics.Org" 
<bio_bulletin_board at bioinformatics.org>
Sent: Friday, September 16, 2005 10:56 PM
Subject: [BiO BB] Protein sequence clustering program needed


I need a protein sequence clustering program for a relatively low
sequence ID (30-40%), for a small (<=200) number of sequences. Ideas?

Thanks,

Iddo

-- 

Iddo Friedberg, Ph.D.
The Burnham Institute
10901 N. Torrey Pines Rd.
La Jolla, CA 92037
Tel: (858) 646 3100 x3516
Fax: (858) 713 9930
http://ffas.ljcrf.edu/~iddo

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