[BiO BB] Get Swiss-Port ID from protein names

Nannan janynan at gmail.com
Wed Aug 9 15:29:34 EDT 2006

Unfortunately, I only have some weak descriptions of protein (protein name).
Is there any way of getting their Swissport IDs?

On 8/7/06, Dr. Christoph Gille <christoph.gille at charite.de> wrote:
> >I have a list of proteins (around 70), I need to get their Swissport IDs.
> I
> >don't want to do it manually. Any idea of doing it?
> I understand that you have the sequences ?
> U could download the Swissprot database as one single file.
> Transform this large swissprot file such that there is one line per
> entry starting with the ID and containing the entire sequence
> like
> You may need basic text processing skills using  sed, grep, tr.
> Then you can then search in this transformed swissprot file
> with  fgrep with the 70 sequences as query to identify the respective
> entry.
> _______________________________________________
> General Forum at Bioinformatics.Org -
> BiO_Bulletin_Board at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.bioinformatics.org/pipermail/bbb/attachments/20060809/f5217c80/attachment.html>

More information about the BBB mailing list