[BiO BB] how to find gene neighbours
mkgovindis at yahoo.com
Wed Feb 1 21:46:31 EST 2006
I think NCBI's map viewer can elp you find neighbouring genes .....
Are u looking for an algorithm or just want to map you genes on to genomes and identify their neighbours
Iddo Friedberg <idoerg at gmail.com> wrote:
Generally, you can do that by going to the genomic database of choice
for your particular organism. As you have not mentioned which organism
those genes are form, it is rather hard to make a recommendation.
Ensembl, www.fruitfly.org, yeastgenome.org are examples of such
databases for Eukaryotic models.
A list for bacterial projects is available from :
>I have a few gi numbers. I want to find the their neighbouring genes. How can
>I do that?
>Thanking all in advance
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Iddo Friedberg, Ph.D.
Burnham Institute for Medical Reseach
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