[BiO BB] (no subject)

[sravan sravan]

Dear friends,
             I am working to study microsatellites. In this regard, I have to generate the 
equivalent classes of repeat motifs. Hence, I request for your assistance by providing me 
the source code, methodology or algorithm in detail / pseudo code. 
Ex: AA,AC,AG,AT,CA,CC,CG,CT,GA,GC,GG,GT,TA,TC,TG,TT :
            AC : AC,CA,GT,TG
            AG : AG,GA,CT,TG
------------------------------------------------------------------
In addition: For Tri,Tetra,Penta,Hexa Motifs:
                Ex: ACG,CGA,GAC      AGC,GCA,CAG should be in two seperate classes. But I am 
getting in single class due to the equal nucleotide composition. Please suggest me some 
solution for this and any additional issues explored by you.

          I appreciate your early response, as it is an urgent requirement.
 
Thank you very much.

Regads.
Sravan.  

Dear Bio_Bulletin_Board,
               This is an urgent requirement. Hence, I request for your early response.

Thanks.
Sravan.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.bioinformatics.org/pipermail/bbb/attachments/20060206/f19d66f6/attachment.html>