[BiO BB] Parallel MEME (motif finding)

[Samantha Fox]

Willy,
Thanks for the response. The dataset is quite big (arnd 10^6 bp). That is
the reason I am not running it serially.
I have not tried Eise's program.

~S

On 1/3/06, Willy Valdivia-Granda <willy_valdivia at orionbiosciences.com>
wrote:
>
> Samantha
>
> Have you tried the program of Mike Eisen to look motifs? One problem
> with meme is that even when you install and make it run ith MPI it you
> get a high number of false positives. I haven't tried the Eisen
> program. How big is the dataset?
>
> Best luck
>
> Willy Valdivia
>
>
> > -------- Original Message --------
> > Subject: [BiO BB] Parallel MEME (motif finding)
> > From: Samantha Fox <>
> > Date: Tue, January 03, 2006 5:08 pm
> > To: bio_bulletin_board at bioinformatics.org
> >
> > Hi,
> >  Can anyone point me to a place where I can submit large MEME jobs on
> parallel. They are too intensive to be run serially.
> >
> >  Thanks,
> >  ~S
> >
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>
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