[BiO BB] Getting sequences by base pair locations
y.itan at ucl.ac.uk
Thu Jul 27 12:22:36 EDT 2006
I was BLATing a few hundred human genes against the chimp genome, and
kept the best chimp hits for every human gene.
I have the base pair start and end location for every chimp hit, and I
need to get the sequence for each of these chimp hits. Here is an
example for a few chimp hits bp locations:
I have one chimp genome file (about 3GB) including all chromosomes, but
I could also get one file per chromosome if that would make things
easier. Does anyone have a script or a link for an interface that can
do the job?
Thank you very much,
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