[BiO BB] TM-HMM Web service for class?

[Diego Martinez]

you might want to try Phobius,
there is an academic license at the bottom of this page.

Diego



http://phobius.cgb.ki.se/instructions.html
--- Yaoqi Zhou <yqzhou at buffalo.edu> wrote:

> You have to input your sequences.
> 
> Yaoqi Zhou, Associate Professor
> **CHECK out Newly UPDATED webpage** on
> http://theory.med.buffalo.edu
> Department of Physiology and Biophysics
> University at Buffalo, State University of New York
> 124 Sherman Hall,  Buffalo, NY 14214
> (716) 829-2985 Fax (716) 829-2344
> Email: yqzhou at buffalo.edu
> NEW Office/Lab Address: 306/308 Cary Hall
> 
> On Jun 8, 2006, at 1:45 AM, Shameer Khadar wrote:
> 
> > Hi,
> >
> >  I couldnt find any WebServices here -
> >  I found only web servers !!!!!
> >  --
> >  S K
> >
> > On 6/7/06, Yaoqi Zhou <yqzhou at buffalo.edu> 
> > wrote:http://theory.med.buffalo.edu
> >>
> >>
> >> Yaoqi Zhou, Associate Professor
> >> **CHECK out Newly UPDATED webpage** on
> >> http://theory.med.buffalo.edu
> >> Department of Physiology and Biophysics
> >> University at Buffalo, State University of New York
> >> 124 Sherman Hall,  Buffalo, NY 14214
> >> (716) 829-2985 Fax (716) 829-2344
> >> Email: yqzhou at buffalo.edu
> >> NEW Office/Lab Address: 306/308 Cary Hall
> >>
> >> On Jun 7, 2006, at 11:33 AM, Ann Loraine wrote:
> >>
> >> > Hi,
> >> >
> >> > I'm looking for a Web service that will let me upload a protein
> >>  > sequence (can't use ids, sorry...these are gene predictions) and 
> >> then
> >> > retrieve results from TM-HMM or a similar program that predicts
> >> > membrane-spanning regions and topology.
> >> >
> >> > This is for a class demo and also for students doing term projects.
> >> >
> >> > Any advice would be much appreciated!
> >> >
> >> > Yours,
> >> >
> >> > Ann
> >> >
> >> > --
> >> > Ann Loraine
> >> > Assistant Professor
> >> > Section on Statistical Genetics
> >> > University of Alabama at Birmingham
> >> > http://www.ssg.uab.edu
> >> > http://www.transvar.org
> >> > _______________________________________________
> >> > Bioinformatics.Org general forum  -
> >> > BiO_Bulletin_Board at bioinformatics.org
> >> > https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
> >> >
> >> >
> >>
> >> _______________________________________________
> >> Bioinformatics.Org general 
> >> forum  -  BiO_Bulletin_Board at bioinformatics.org
> >>  https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
> > _______________________________________________
> > Bioinformatics.Org general forum  -  
> > BiO_Bulletin_Board at bioinformatics.org
> > https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
> 
> _______________________________________________
> Bioinformatics.Org general forum  -  BiO_Bulletin_Board at bioinformatics.org
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> 
http://phobius.cgb.ki.se/instructions.html

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