[BiO BB] TM-HMM Web service for class?

[Catherine Letondal]

Hi,

You can try:
http://bioweb.pasteur.fr/seqanal/interfaces/toppred.html

It's also a Web server, but you can script it through a bioperl module:
http://www.pasteur.fr/recherche/unites/sis/Pise/#pisebioperl

(there is even an example for toppred :  
http://www.pasteur.fr/recherche/unites/sis/Pise/bioperl-examples/ 
toppred.pl)

You can also download it:
ftp://ftp.pasteur.fr/pub/GenSoft/unix/protein/toppred

HTH

	C. Letondal

On Jun 8, 2006, at 8:31 PM, Diego Martinez wrote:

>>>> l
>>>>
>>>> On Jun 7, 2006, at 11:33 AM, Ann Loraine wrote:
>>>>
>>>>> Hi,
>>>>>
>>>>> I'm looking for a Web service that will let me upload a protein
>>>>> sequence (can't use ids, sorry...these are gene predictions) and
>>>> then
>>>>> retrieve results from TM-HMM or a similar program that predicts
>>>>> membrane-spanning regions and topology.
>>>>>
>>>>> This is for a class demo and also for students doing term projects.
>>>>>
>>>>> Any advice would be much appreciated!
>>>>>
>>>>> Yours,
>>>>>
>>>>> Ann
>>>>>
>>>>> --
>>>>> Ann Loraine
>>>>> Assistant Professor
>>>>> Section on Statistical Genetics
>>>>> University of Alabama at Birmingham
>>>>> http://www.ssg.uab.edu
>>>>> http://www.transvar.org
>>>>> _______________________________________________
>>>>> Bioinformatics.Org general forum  -
>>>>> BiO_Bulletin_Board at bioinformatics.org
>>>>> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
>>>>>
>>>>>