[BiO BB] SCOP ids from PDB id
ykalidas at gmail.com
Fri Jun 23 11:38:40 EDT 2006
use the file, "dir.des.scop.txt_1.69"., for obtaining a classification
grep "1a4g" dir.des.scop.txt_1.69
27600 px b.68.1.1 d1a4ga_ 1a4g A:
27601 px b.68.1.1 d1a4gb_ 1a4g B:
and you can get the classification number from it.
On 6/22/06, Pankaj <pankaj at nii.res.in> wrote:
> Hi all,
> I have a few PDB ids.
> I want to know whether these structures are related or not.
> One way was to do it by calculating RMSD among all of them and seeing if
> r related or not.
> Other way was to get their SCOP id's and comapre if they belong to same
> My question is given a PDB id, how do I get its SCOP id?
> Thanking all in advance,
> Pankaj Khurana
> Research Scholar
> National Institute of Immunology
> New Delhi
> Open WebMail Project (http://openwebmail.org)
> Bioinformatics.Org general forum - BiO_Bulletin_Board at bioinformatics.org
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