[BiO BB] Smith-Waterman on FPGA

[Roland Luethy]

Depaan,

     TimeLogic has Smith-Waterman using FPGA, as well as BLAST.
See www.timelogic.com.

Roland
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Roland Luethy mailto:luethy at activemotif.com
Director Bioinformatics Research
TimeLogic Biocomputing
Active Motif Inc.
Phone: (805) 386-2158 
Fax: (206) 203-2027
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> -----Original Message-----
> From: 
> bio_bulletin_board-bounces+roland=luethy.net at bioinformatics.or
> g 
> [mailto:bio_bulletin_board-bounces+roland=luethy.net at bioinform
> atics.org] On Behalf Of Deepan Chakravarthy
> Sent: Monday, October 16, 2006 9:56 AM
> To: General Forum at Bioinformatics.Org
> Cc: anand at novaglobal.com.sg; henny at novaglobal.com.sg; 
> ivanho at novaglobal.com.sg
> Subject: [BiO BB] Smith-Waterman on FPGA
> 
> Hello,
>  I am curious to know if anyone has programmed Smith-Waterman 
> algorithm into FPGA. I guess FPGA is being used to run BLAST. 
> Anyone who is currently playing with FPGA and any of the 
> sequence alignment algorithms please share your experience. 
> Thanks
> Deepan Chakravarthy N
> http://www.codeshepherd.com 
> 
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