[BiO BB] Smith-Waterman on FPGA

[Joe Landman]

Hi Deepan:

  Our partner, Progeniq, has this.

Deepan Chakravarthy wrote:
> Hello,
>  I am curious to know if anyone has programmed Smith-Waterman algorithm
> into FPGA. I guess FPGA is being used to run BLAST. Anyone who is
> currently playing with FPGA and any of the sequence alignment
> algorithms please share your experience. 

  See  http://progeniq.com/product.html for more details.  Since they
are in Singapore as well, you might contact them directly there.

> Thanks
> Deepan Chakravarthy N
> http://www.codeshepherd.com 
> 
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-- 
Joseph Landman, Ph.D
Founder and CEO
Scalable Informatics LLC,
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