[BiO BB] setting simple bioinformatic

[Indranil Mitra]

Hi This is Neil,

Do let me know what is the kind of WET/DRY lab setup you are looking for?
What kind of work you will do in there and I can suggest something after
that.

Best,

-Indranil

-----Original Message-----
From: bbb-bounces at bioinformatics.org [mailto:bbb-bounces at bioinformatics.org]
On Behalf Of Mike Marchywka
Sent: 29 October 2008 05:00
To: bbb at bioinformatics.org
Subject: Re: [BiO BB] setting simple bioinformatic



> Date: Tue, 28 Oct 2008 10:47:33 -0700
> From: marty.gollery at gmail.com
> To: bbb at bioinformatics.org
> Subject: Re: [BiO BB] setting simple bioinformatic
>
> What sort of Bioinformatics do you want to do?
> -Marty
>
> On Thu, Oct 23, 2008 at 9:54 PM, Twaha Daudi  wrote:
>> hello all,
>> greetings
>>
>> My institute would like to set up simple bioinformatic unit for drug
resistance checking/testing and other activities.Please can anyone help me
to point out the hardware and software tools needed?.
>>

Yes, it would help if you could be a little more specific and phrase your
question in terms of an informatics problem 
( to paraphase the US TV show Jeopardy, LOL). This is a pretty large area
and I could offer a couple of 
ideas depending on exactly what you are trying to do. I happen to be more
familiar with things like 
resistance evolution in controlled conditions ( things like testing
hepatitis drug candidates for evolution
of resistant strains ), this was the first google hit for example, 

http://www.natap.org/2006/AASLD/AASLD_17.htm

 but there are a variety of organizations that deal with emerging pathogen
reports
and follow up. For example, I'm on this mailing list, and there are probably
many people here that the moderator
could put you in touch with,

http://www.promedmail.org/pls/otn/f?p=2400:1000:

certainly the US CDC comes to mind also,

http://www.cdc.gov/ncidod/EID/vol11no10/05-0644.htm

If you are interested in stuff like this, there is a link to a group at mit
at the bottom,

http://www.sciencedaily.com/releases/2007/11/071121094524.htm

"These data can be accessed through the Broad Institute website, at
http://www.broad.mit.edu/XDR_TB. "

If you had more details on what exactly your group is trying to do, that
would help narrow down things a bit.



>> Any help is appreciated!
>> Thanks
>>
>>
>>
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>
>
>
> --
> --
> Martin Gollery
> Senior Bioinformatics Scientist
> TimeLogic- a Division of Active Motif
> North America Toll Free (877) 222-9543 ext. 6
> Direct (760) 431-1263 ext. 6
>
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