[Bio-linux-dev] Bio-Linux-dev Digest, Vol 6, Issue 7

[Joachim Jacob]

Hello,

I have used *Biolinux 5* for a three day training session I organized at
VIB (www.bits.vib.be).
It helped us a lot - thanks. During the training we started with
installing Biolinux5 as a virtual machine (virtualbox).
Updates were not performed. This vm was used during the whole course.

One question though: although the emboss GUI was present, we had to
install emboss again to make it work.
$ sudo apt-get install emboss

The original installation was apparently not found.

Also: we required for perl two additional packages:
perl-class-inspector and
libfile-slurp-perl

Thanks and regards,
Joachim.


On 20/05/10 13:00, bio-linux-dev-request at nebclists.nerc.ac.uk wrote:
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> Today's Topics:
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>    1. Re: bio-linux-backups (Tony Travis)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 19 May 2010 15:22:41 +0100
> From: Tony Travis <a.travis at abdn.ac.uk>
> Subject: Re: [Bio-linux-dev] bio-linux-backups
> To: bio-linux-dev at nebclists.nerc.ac.uk
> Message-ID: <4BF3F431.7050101 at abdn.ac.uk>
> Content-Type: text/plain; charset="iso-8859-1"; Format="flowed"
>
> On 17/05/10 09:32, Tim Booth wrote:
>   
>> Hi Tony,
>>
>> Yes, I changed the setup script to run 'mkfs.ext4' instead of
>> 'mkfs.ext3' as you suggested.
>> [...]
>>     
> Hello, Tim.
>
> Although /backups itself is now on an ext4 filesystem, your "backup" 
> script" does not detect or dump Bio-Linux on ext4 filesystems ;-)
>
> Attached is a patch to show the differences between your backup script 
> and mine: I have a configuration file in /etc/default, and use ETOH.
>
> Bye,
>
>    Tony.
>   

-- 

BITS logo    
*
Joachim Jacob, PhD. <http://be.linkedin.com/in/joachimjacob>*
Bioinformatics Trainer
BITS - www.bits.vib.be <http://www.bits.vib.be/>    
VIB - www.vib.be <http://www.vib.be/>

VIB headquarters, Rijvisschestraat 120, BE-9052 Gent, Belgium  (see map
<http://maps.google.be/maps/ms?ie=UTF8&hl=nl&msa=0&msid=110984434447938768012.00047d0caa7a96a740597&ll=51.017345,3.707585&spn=0.022003,0.043731&t=h&z=15>)
Tel.: +32 9 244 66 11     Fax.: +32 9 244 66 10


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