[Bio-linux-dev] issues installing qiime and denoiser

[Mattias de Hollander]

Hello Bio-linux developers,

I am trying to install Qiime and Denoiser on a fresh Ubuntu 10.04 LTS
installation, but I am running in some issues.

The bio-linux-denoiser package installs perfectly but conflicts with
bio-linux-qiime. Besides that bio-linux-qiime depends on
python-matplotlib, but a dependency for this package can not be
installed (libgdk-pixbuf2.0-0). Is there way to solve these issues?


Installing bio-linux-qiime:

[145.100.30.212] out: The following packages have unmet dependencies:
[145.100.30.212] out:   bio-linux-qiime: Depends: python-matplotlib but it is not going to be installed
[145.100.30.212] out:                    Conflicts: bio-linux-denoiser but 1:0.851-9 is to be installed
[145.100.30.212] out: E: Broken packages


Adding python-matplotlib to the installation command:

[145.100.30.212] out: The following packages have unmet dependencies:
[145.100.30.212] out:   bio-linux-qiime: Conflicts: bio-linux-denoiser
but 1:0.851-9 is to be installed
[145.100.30.212] out:   python-matplotlib: Depends: libgdk-pixbuf2.0-0
(>= 2.22.0) but it is not installable
[145.100.30.212] out: E: Broken packages


Regarding the Denoiser, are there any plans to upgrade the package to
the latest version (0.91). I am interested in that version because it
supports titanium reads. More info: http://www.microbio.me/denoiser/

Thanks for any help!

Mattias



-- 
Bioinformatician
Netherlands Institute of Ecology (NIOO-KNAW)
Wageningen, the Netherlands
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.bioinformatics.org/pipermail/bio-linux-devel/attachments/20110919/7a9ac97d/attachment.html>