[Bio-linux-dev] tophat2

[Tim Booth]

Hi,

I've pushed the updates to all these and Velvet, so everything should be
current now.

Cheers,

TIM

On Tue, 2012-11-13 at 17:32 +0000, William Spooner wrote:
> Many thanks Tim,
> 
> We'll test that tomorrow. I presume it's the complete bowtie2/tophat2/cufflinks2 stack?
> 
> Will
> 
> On 13 Nov 2012, at 16:58, Tim Booth wrote:
> 
> > Hi Will,
> > 
> > The TopHat package maintained by Debian Med is up-to-date and seems to
> > build fine on Ubuntu, so I've pushed a newer version to the Bio-Linux
> > PPA.  Anyone who already upgraded to BL7 will get the update
> > automatically.
> > 
> > Cheers,
> > 
> > TIM
> > 
> > On Tue, 2012-11-13 at 09:58 +0000, William Spooner wrote:
> >> One for Tim, Brad,
> >> 
> >> What is the status of tophat2 packaging for BL? Google suggests that Brad is working on something. Anything we can do to help?
> >> 
> >> Thanks,
> >> 
> >> Will
> >> 
> >> ---
> >> William Spooner                          http://eaglegenomics.com
> >> Disclaimer: http://www.eaglegenomics.com/about/privacy-statement/
> >> 
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> > 
> > -- 
> > Tim Booth <tbooth at ceh.ac.uk>
> > NERC Environmental Bioinformatics Centre 
> > 
> > Centre for Ecology and Hydrology
> > Maclean Bldg, Benson Lane
> > Crowmarsh Gifford
> > Wallingford, England
> > OX10 8BB 
> > 
> > http://nebc.nerc.ac.uk
> > +44 1491 69 2705
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> ---
> William Spooner                          http://eaglegenomics.com
> Disclaimer: http://www.eaglegenomics.com/about/privacy-statement/
> 
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-- 
Tim Booth <tbooth at ceh.ac.uk>
NERC Environmental Bioinformatics Centre 

Centre for Ecology and Hydrology
Maclean Bldg, Benson Lane
Crowmarsh Gifford
Wallingford, England
OX10 8BB 

http://nebc.nerc.ac.uk
+44 1491 69 2705