[Bio-Linux] KEGG SOAP API

[Nathan S. Haigh]

Sorry for the misunderstanding, I just copied and pasted the command from
the web site. I did in fact use /usr/local/java/lib/. Any other suggestions?

Thanks
Nathan

-----Original Message-----
From: bio-linux-bounces at envgen.nox.ac.uk
[mailto:bio-linux-bounces at envgen.nox.ac.uk] On Behalf Of Tony Travis
Sent: 16 June 2006 10:27
To: Bio-Linux help and discussion
Subject: Re: [Bio-Linux] KEGG SOAP API

Nathan S. Haigh wrote:
> I'm trying to install Apache Axis libraries following the instructions at:
> 
> http://www.genome.jp/kegg/soap/doc/keggapi_manual.html#label:8
> 
>  
> 
> I copy the libraries to /usr/local/java/lib/
> 
> And then try the first command mentioned on this page:
> 
> java -classpath
/path/to/lib/axis.jar:/path/to/lib/jaxrpc.jar:/path/to/lib/commons-logging.j
ar:/path/to/lib/commons-discovery.jar:/path/to/lib/saaj.jar:/path/to/lib/wsd
l4j.jar:. org.apache.axis.wsdl.WSDL2Java -p keggapi
http://soap.genome.jp/KEGG.wsdl
 > [...]

Hello, Nathan.

You have to use a "/path/to/lib" appropriate for your own system!

try:

java -classpath 
/usr/local/java/lib/axis.jar:/usr/local/java/lib/jaxrpc.jar:/usr/local/java/
lib/commons-logging.jar:/usr/local/java/lib/commons-discovery.jar:/usr/local
/java/lib/saaj.jar:/usr/local/java/lib/wsdl4j.jar:. 
org.apache.axis.wsdl.WSDL2Java -p keggapi http://soap.genome.jp/KEGG.wsdl

	Tony.
-- 
Dr. A.J.Travis,                     |  mailto:ajt at rri.sari.ac.uk
Rowett Research Institute,          |    http://www.rri.sari.ac.uk/~ajt
Greenburn Road, Bucksburn,          |   phone:+44 (0)1224 712751
Aberdeen AB21 9SB, Scotland, UK.    |     fax:+44 (0)1224 716687

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