[Bio-Linux] [Biolinux] QIIME 1.9.0 release errors info required

[Tim Booth]

Hi Marta,

No worries.  I suspected that this was the case but I wanted to be sure
the package installation was right before I told you to start removing
things.

Good luck with your data analysis.

Cheers,

TIM

On Fri, 2015-04-24 at 13:08 +0100, MARTA POZUELO DEL RIO wrote:
> Hi Tim,
> 
> 
> Sorry to bother you. We have found out that a previous partner had
> copied qiime 1.6.0 scripts in our /usr/local/bin folder, so, removing
> them from it, qiime now takes scripts
> from /usr/lib/qiime/bin/pick_otus.py where the new scripts have been
> installed. So the problem is solved.
> 
> 
> Thanks very much for your time.
> 
> 
> Marta
> 
> 
> 2015-04-24 13:23 GMT+02:00 MARTA POZUELO DEL RIO <mpozud00 at gmail.com>:
>         Hi Tim,
>         
>         
>         I've run the commands you asked me for on my computer and
>         these are the results:
>         
>         dpkg -S /usr/local/bin/pick_otus.py
>         dpkg-query: no path found matching
>         pattern /usr/local/bin/pick_otus.py
>         
>         dpkg -S /usr/local/bin/split_libraries_fastq.py
>         dpkg-query: no path found matching
>         pattern /usr/local/bin/split_libraries_fastq.py
>         
>         apt-cache policy qiime
>         qiime:
>           Installed: 1.9.0+dfsg-0biolinux5
>           Candidate: 1.9.0+dfsg-0biolinux5
>           Version table:
>          *** 1.9.0+dfsg-0biolinux5 0
>                 500 http://ppa.launchpad.net/nebc/bio-linux/ubuntu/
>         trusty/main amd64 Packages
>                 100 /var/lib/dpkg/status
>              1.8.0+dfsg-2 0
>                 500 http://gb.archive.ubuntu.com/ubuntu/
>         trusty/universe amd64 Packages
>         
>         apt-cache policy bio-linux-qiime
>         bio-linux-qiime:
>           Installed: 2:1bl-10
>           Candidate: 2:1bl-10
>           Version table:
>          *** 2:1bl-10 0
>                 500 http://nebc.nerc.ac.uk/bio-linux/
>         unstable/bio-linux amd64 Packages
>                 100 /var/lib/dpkg/status
>         
>         
>         
>         When calling qiime and running print_qiime_config_all I also
>         get this:
>         
>         QIIME library version:    1.9.0
>         QIIME script version:    1.6.0
>         
>         
>         
>         When opening these scripts contained in folder /usr/local/bin,
>         they are from version 1.6.0, but when checking the package
>         installed (/usr/lib/python2.7/dist-packages/qiime/), these
>         scripts are from version 1.9.0.
>         
>         
>         Hope this will help.
>         
>         
>         
>         Thanks,
>         
>         
>         Marta
>         
>         
>         
>         
>         
>         
>         
>         
> 
> 

-- 
Tim Booth <tbooth at ceh.ac.uk>
NERC Environmental Bioinformatics Centre 

Centre for Ecology and Hydrology
Maclean Bldg, Benson Lane
Crowmarsh Gifford
Wallingford, England
OX10 8BB 

http://environmentalomics.org/bio-linux
+44 1491 69 2297