[Bio-Linux] (no subject)

[Roy Lee]

> >
> >My name is Roy Lee. With Hunter College in New York city.
> >When I am running a blast search from the command line for a protein
fasta
> >file, I keep getting asked where the nr reference database is. May you
please
> >let me know what I need to do to access that database on my blast
search? I
> >don\'t think I should be downloading a 15GB database onto my ubuntu VM.
> >
> >I\'m in the ubuntu terminal  , so far, I\'ve written
> >
> >$ blastp -query PROTEIN SEQ.fa -db $blastdb/nr -out PROTEIN SEQ.blast
> >
> >
> >I keep getting the error message that the nr database is non-existent.
Would
> >you happen to know where this database is? Thanks.
> >Thanks for your help.
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