[Bio-Linux] GALAXY import file size limit?

[Ian Donaldson]

Thank you for your reply.  The aim was that people could also run their own analysis using the same VM.  Is it fair to say that the VM option is not suitable for "real world" analysis, in favour of a full install?

Ian

________________________________________
From: Sander Granneman [sgrannem at staffmail.ed.ac.uk]
Sent: 16 January 2015 16:29
To: Bio-Linux help and discussion
Subject: Re: [Bio-Linux] GALAXY import file size limit?

Simplest solution I guess is to use smaller bed files.
1.5 GB I guess equates to 10 million reads?
Would 1 million suffice for your tutorial?

Hope this helps,

Sander

> On Jan 16, 2015, at 4:11 PM, Ian Donaldson <Ian.Donaldson at manchester.ac.uk> wrote:
>
> Hi,
>
> I am trying out Bio-Linux 8 using the VM download.  I am having trouble importing two 1.5 GB BED files into GALAXY as the memory assigned to the VM (4GB) is max'ing out.  Can anyone recommend a usable amount of RAM to allow this sort of operation to complete?
>
> My aim is to give instructions to people on how to download the VM and run a GALAXY tutorial.
>
> Thank you,
>
> Ian
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The 10th International EMBO Conference on Ribosome Synthesis will be held in Brussels, Belgium, 19-23 August 2015.

Organizing committee : Sander Granneman (University of Edinburgh), Katrin Karbstein (The Scripps Research Institute, Florida), Denis Lafontaine (University of Brussels), Tom Meier (Albert Einstein College of Medicine, New York) and Joost Zomerdijk (University of Dundee).

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Sander Granneman, PhD
Wellcome Trust RCD Fellow
University of Edinburgh
Institute of Structural and Molecular Biology
Centre for Synthetic and Systems Biology (SynthSys)
University of Edinburgh
Max Born Crescent
CH Waddington Building, room 3.06
EH9 3BF
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