[BioBrew Users] post installation?

Soumyadeep nandi soumyadeep_nandi at yahoo.com
Tue Mar 2 11:24:38 EST 2004

Hi Everybody,

Thrilled to have installed BioBrew. It looks like the
base for exactly what we want. Would like R etc...but
more of that later.

We are more or less familiar with all the (Bio)
packages that constitute BioBrew, and have run HMMER
using pvm strung over a cluster of workstations...but 

We have never used Rocks. So though installation went
without any hiccups - the frontend and compute nodes
boot  smoothly, we cannot access anything easily : No
http access to the frontend for the homepage or (web)
blast. We identified the BioBrew packages to the

Can we have some pointers to:

1. Setting up the lam-mpi and pvm environments

2. Activating Apache to allow access to the frontend

3. Testing the cluster

4. Running the biobrew packages (Do we just have to
add the directories to the path?)

5. Is there a x-windows based browser as part of the

Soumyadeep Nandi

Bioinformatics Center
Jawaharlal Nehru University
New Delhi

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