[BioBrew Users] Re: BioBrew

[Glen Otero]

I thought I fixed that problem. I'll get to it ASAP. In the meantime, 
if you delete these two lines from 
/home/install/profiles/3.1.0/nodes/mpi-devel.xml

  <package roll="hpc" arch="i386">mpich-gm-devel</package>
  <package roll="hpc" arch="i386">gm-devel</package>

(you shouldn't have to delete the two ia64 lines)

and then rebuild your distro like so:

cd /home/install
rm -rf rocks-dist
rocks-dist dist

you should be able to install nodes without that interruption. Let me 
know how it goes.

Glen


On Mar 10, 2004, at 1:35 PM, Joaquin Zaragoza wrote:

> I installed BioBrew 3.0 on my front node no problem.  When installing 
> with pxe on child nodes received the following error.
>  
>     Missing Package
>  
>     You have specified taht the package 'gm-devel' should be 
> installed. This package does not exist.  Would you like to continue or 
> abort       your installation?
>  
> Then same message for 'mpich-gm-devel'
>  
>  
> I simply hit 'Continue' and the installation proceeded.  Thought you 
> would like to know.  Other than that, so far so good.
>  
>  
> -Joaquin Zaragoza
>  
>  
>  
> ----- Original Message -----
>  From: Glen Otero
> To: Joaquin Zaragoza
> Sent: Tuesday, March 09, 2004 12:59 PM
> Subject: Re: BioBrew
>
> I didn't have the permissions set right. You should be able to 
> download it now.
>
> Glen
>
> On Mar 9, 2004, at 2:41 PM, Joaquin Zaragoza wrote:
>
>
>
> From http://bioinformatics.org/ftp/biobrew/ I click 
> BioBrew-3.0-x86.iso,  then receive
>  
> 'Forbidden   You don't have permission to access 
> /ftp/biobrew/BioBrew-3.0-x86.iso on this server'
> 'Apache/1.3.27 Server at bioinformatics.org Port 80'
>  
>  
> -Joaquin Zaragoza
>  
>  
> ----- Original Message -----
> From: Glen Otero
>  To: Joaquin Zaragoza
>  Sent: Tuesday, March 09, 2004 12:22 PM
> Subject: Re: BioBrew
>
>
> On Mar 9, 2004, at 2:17 PM, Joaquin Zaragoza wrote:
>
>
> I would like to try BioBrew 3.0 but I get a 'forbidden' error when I 
> try. 
>
> Forbidden error when you try to download it?
>
>
> It would be easier than reinstalling all the rpms on my front node 
> manually.  Either way is fine though.  Thanks.
>  
> I really have not had the chance to use all the components as much as 
> I would like,  b/c of other projects but from what I used I was very 
> happy.  Thanks again.
>  
>  
> -Joaquin Zaragoza
>  
>  
> ----- Original Message -----
> From: Glen Otero
> To: Joaquin Zaragoza
> Sent: Tuesday, March 09, 2004 12:05 PM
> Subject: Re: BioBrew
>
> I can make the rpms available again. BioBrew 3.0 is available on the 
> site, I just haven't announced it yet.
> But it's a single DVD iso, so you will need to burn a DVD and hook up 
> a DVD to your frontend to install it. I often do this by opening up 
> the frontend, disconnecting the CD, and connecting the cables to a 
> DVD. Either way, let me know what you would like to do.
>
> How was BioBrew working for you before the forced reintstall?
>
> Glen
>
> On Mar 9, 2004, at 1:08 PM, Joaquin Zaragoza wrote:
>
>
> Last month you put your biobrew rpm's online for me to download but I 
> was forced to reinstall my cluster and the ncbitools rpm is corrupt.  
> I checked the site but you have since taken them off.  If possible 
> could you make them available again? If not, when do you expect 
> BioBrew 3.0 to be available.  Thanks for all you help.
>  
> -Joaquin Zaragoza
>  
>  
>  
>  
>  
>  
> ----- Original Message -----
> From: Glen Otero
> To: Joaquin Zaragoza
> Sent: Monday, February 09, 2004 2:54 PM
> Subject: Re: Installation
>
> I'll try to upload them to http://bioinformatics.org/ftp/biobrew 
> tonight. I'll send you an email when they're up.
>
> Glen
>
> On Feb 9, 2004, at 4:49 PM, Joaquin Zaragoza wrote:
>
>
> I'm not sure why it could not find the cdrom either.  I tried three 
> different drives but all gave me the same result.  The individual 
> rpms/srpms would be greatly appreciated.  Thanks for all you help.
>  
> Joaquin Zaragoza
> ----- Original Message -----
> From: Glen Otero
> To: Joaquin Zaragoza
> Sent:Monday, February 09, 2004 2:46 PM
> Subject:Re: Installation
>
> Joaquin-
>
> I'm surprised that a driver for your CDROM is missing from the 
> distribution, but BioBrew is based on an older version of Rocks, and 
> that may be the problem. I haven't posted the latest version of 
> BioBrew yet, which is based on Rocks 3.1.0, which I'm sure would solve 
> your problem. Unfortunately, the new release is going to be 
> distributed on a DVD, which doesn't help you any. I can post the 
> individual rpms/srpms that were used to build BioBrew, so you can 
> download them and install them according to the Rocks docs. Let me 
> know what you would like to do.
>
> Glen
>
> On Feb 9, 2004, at 2:05 PM, Joaquin Zaragoza wrote:
>
>
> Thanks for you help ahead of time.  I may not have been clear before 
> but I installed rocks 3.1.0 just fine.  When I try to install BioBrew 
> in the front node it immediately gives me an error message saying 
> 'cannot find ks.cfg.'  I accept and then it needs a driver for my 
> cdrom.  Any suggestions would be greatly appreciated.  Thanks
>  
> -Joaquin Zaragoza
>
> Glen Otero, Ph.D.
> Linux Prophet
> 619.917.1772
>
>
> Glen Otero, Ph.D.
> Linux Prophet
> 619.917.1772
>
>
> Glen Otero, Ph.D.
> Linux Prophet
> 619.917.1772
>
>
> Glen Otero, Ph.D.
> Linux Prophet
> 619.917.1772
>
>
> Glen Otero, Ph.D.
> Linux Prophet
> 619.917.1772
>
>
Glen Otero, Ph.D.
Linux Prophet
619.917.1772

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