[Bioclusters] Need ur help badly

[Tristan Gill]

Hello Sharon,

I have never installed MPI blast personally, but your error is =
indicative of mpiCC not being in path or having improper permissions.  =
Hopefully this will get you moving in right direction until someone with =
more direct experience with MPI blast can jump in here.

If your interested in trying a supported version of NCBI Blast that is =
parallel, accelerated, designed to significantly improve price =
performance, easily administered and combines tools for enhanced =
analysis, just contact me off line for a free eval.  Usually evals are =
installed and running in under an hour and our Bioinformatics support =
group can answer any questions and assist you along the way. =20

BTW, Paracel blast also plays nice with SGE and LSF if this is a =
multi-purpose cluster.

I would also be happy to answer any questions or provide you with more =
information.

Best regards,

Tristan

Tristan Gill
Bioinformatics Account Manager
Paracel Inc.
1055 E. Colorado Blvd.
Pasadena, CA 91106
tristan@paracel.com
Office:  626-744-2064
Cell:    626-676-1822
Fax:     626-744-2001


> -----Original Message-----
> From: shalini sharon [mailto:proclaim_jesus@hotmail.com]
> Sent: Tuesday, February 17, 2004 6:56 PM
> To: bioclusters@bioinformatics.org
> Subject: [Bioclusters] Need ur help badly
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> To : Tristan Gill
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>      I 'm Sharon here.
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>      I am very new to Bioinformatics. Therefore I thought=20
> maybe u might be=20
> able to help me.
>      Is It possible if I can ask abt an error I faced while using=20
> mpiBLAST-1.2.0?
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>     This is the error i face. Do u know how to resolve it?
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> root@bigcpu024 mpiBLAST-1.2.0]# make
> Making all in src
> make[1]: Entering directory `/usr/local/mpiBLAST-1.2.0/src'
> if mpiCC -DPACKAGE_NAME=3D\"\" -DPACKAGE_TARNAME=3D\"\"=20
> -DPACKAGE_VERSION=3D\"\"=20
> -DPACKAGE_STRING=3D\"\" -DPACKAGE_BUGREPORT=3D\"\" =
-DPACKAGE=3D\"mpiBLAST\"=20
> -DVERSION=3D\"1.2.0\" -DSTDC_HEADERS=3D1 -D_FILE_OFFSET_BITS=3D64=20
> -DTIME_WITH_SYS_TIME=3D1  -I. -I. -I../include/=20
> -I/usr/local/ncbi/include/ =20
> -DUSING_MPI   -O2 -DINSTALL_PREFIX=3D"\"/usr/local\"" -g -O2 -MT=20
> mpiblast-blastjob.o -MD -MP -MF ".deps/mpiblast-blastjob.Tpo" \
> -c -o mpiblast-blastjob.o `test -f 'blastjob.cpp' || echo=20
> './'`blastjob.cpp;=20
> \
> then mv ".deps/mpiblast-blastjob.Tpo" ".deps/mpiblast-blastjob.Po"; \
> else rm -f ".deps/mpiblast-blastjob.Tpo"; exit 1; \
> fi
> /bin/sh: line 1: mpiCC: command not found
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> Rgds
> Sharon
> make[1]: *** [mpiblast-blastjob.o] Error 1
> make[1]: Leaving directory `/usr/local/mpiBLAST-1.2.0/src'
> make: *** [all-recursive] Error 1
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