Hi , I am using the BPlite perl module to parse my blast reports. It works very well for NCBI output but has problems with mpiblast. Primarily because mpiblast reports don't have a footer. I could fix this problem but now when I run mpiblast for protein databases , the output doesn't contain the "Identities" line for some query sequences which again causes my BPlite to fail. Has anyone else faced this problem ? My mpiblast version is 1.2.1. Thanks, Rakhi -------------- next part -------------- An HTML attachment was scrubbed... URL: http://bioinformatics.org/pipermail/bioclusters/attachments/20050126/14c5b755/attachment.htm