We fixed this in Bio::SearchIO. BPlite is an older but lightweight parser. -jason On Jan 25, 2005, at 10:23 PM, Rakhi Bhat NONLILLY wrote: > > Hi , > > I am using the BPlite perl module to parse my blast reports. It works > very well for NCBI output but has problems with mpiblast. > Primarily because mpiblast reports don't have a footer. I could fix > this problem but now when I run mpiblast for protein databases , > the output doesn't contain the "Identities" line for some query > sequences which again causes my BPlite to fail. > Has anyone else faced this problem ? My mpiblast version is 1.2.1. > > Thanks, > Rakhi_______________________________________________ > Bioclusters maillist - Bioclusters at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bioclusters > -- Jason Stajich jason.stajich at duke.edu http://www.duke.edu/~jes12/ -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/enriched Size: 1012 bytes Desc: not available Url : http://bioinformatics.org/pipermail/bioclusters/attachments/20050126/059c6d1a/attachment-0001.bin