When I use idsfasta program from EMBOSS to index NCBI nt fasta format database, the program complains that "duplicate ID found" and aborts. Has anyone used idsfasta program to index NCBI nt database and has the same problem? I tried to change the fields option from acum (accession number) to seqvn (sequence version and GI) but it doesn't solve the problem. Thanks, Luobin