[Bioclusters] mpiblast on SGI Altix

Mike Muratet muratem at eng.uah.edu
Wed Mar 16 12:13:28 EST 2005


Does anyone have any experience with mpiblast on the SGI Altix and can you
offer any suggestions for configuring jobs? The Altix 350 has 16-CPU nodes
with shared memory. The machine I'm using has 56 total CPUs. Can anyone
offer any advice for how many database partitions to use, and how they get
assigned to nodes/CPUs?



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