Hi Sarah: I'm not sure if there are already documentations/HOWTO on how to setup InterProScan with SGE/PBS, but if there aren't, perhaps we can have someone host a wiki and have these documentations available and linked directly from your page - in that case at least folks have some idea on how to get started. Just my $0.02. Thanks, Bernard > -----Original Message----- > From: bioclusters-bounces+bli=bcgsc.ca at bioinformatics.org > [mailto:bioclusters-bounces+bli=bcgsc.ca at bioinformatics.org] > On Behalf Of Sarah Hunter > Sent: Tuesday, September 05, 2006 3:59 > To: bioclusters at bioinformatics.org > Subject: [Bioclusters] Questions about setting up > InterProScan on clusters > > Hi everyone, > > I just wanted to post a quick message to the mailing list to > firstly apologise if there have been > any problems with setting up InterProScan on your clusters - > unfortunately, we only have LSF > in-house and we therefore can't test on other systems like > SGE or PBS. However, I always try to > hazard a guess when we get questions about those systems. > Specifically, the SGE configuration files > themselves were re-written for SGE6 by me having remote > access to a user's installation (thank you > Jenny!) although I soon discovered that that installation had > its own quirks which were not standard > for other systems. > > The fact that you guys are here supporting each other when > installing the software on these atypical > (to EBI, anyway) set-ups is a great help - particularly > because we only have a limited number of > people who can answer support emails (i.e. mainly me). > > I just want to reiterate that if you have any questions about > setting InterProScan on your local > clusters, please email support (at) ebi.ac.uk or interhelp > (at) ebi.ac.uk. If you don't get a reply > within a couple of days, hassle us again :-) > > At the same time, it would be nice to encourage the > development of a community of InterProScan users > who have the program installed on different clusters, so that > if anyone has a question about a > queue-specific issue, the community could be consulted and > alterations tested, rather than relying > on our limited resources at EBI. What do people think about this? > > Sorry if you emailed and didn't get a satisfactory response. > And thanks for all the hard work you > have evidentially put in in order to get InterProScan working. > > Best regards, > > Sarah Hunter > > ----------------------------------------- > InterPro Programming Coordinator > E.B.I. > Wellcome Trust Genome Campus > Hinxton > CB10 1SD > ----------------------------------------- > _______________________________________________ > Bioclusters maillist - Bioclusters at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bioclusters >