[Biococoa-dev] singletons

[Koen van der Drift]

What I am actually looking for is the equivalent of the code that John 
put in BCNucleotideDNA where he has a class method for each possible 
base. Before I start doing that for all + 20 amino acids, I want to be 
sure that that is the most effective way to do it. Somehow I have the 
feeling this can be much more simplified, maybe by mainiaining an array 
of singletons  (is that what BioJava calls an alphabet?).  But maybe 
not, therefore I was looking for the way BioJava does this. My 
apologies if I was not clear when I asked my question :)


- Koen.


On Aug 21, 2004, at 3:58 PM, Alexander Griekspoor wrote:

> Koen,
>
> If I'm correct, an amino acids is of class AtomicSymbol, a subclass of 
> Symbol defined in org.biojava.bio.symbol.
> If you have the source besure to checkout AtomicSymbol.java
> Also, take a look at Geneticcode.java
> The Aminoacids themselves seem to be defined in AlphabetManager.xml
> That's what I could find at first glance...
> Cheers,
> Alex
>
>
> Op 21-aug-04 om 21:39 heeft Koen van der Drift het volgende geschreven:
>
>> Hi,
>>
>> I looked around the BioJava code to see how they implement the use of 
>> singletons for amino acids. Does anyone know where this is coded, I 
>> couldn't find it.
>>
>> thanks,
>>
>> - Koen.
>>
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>>
>>
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>                      ** Alexander Griekspoor **
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