[BioCocoa-dev] NEW VERSION

[Alexander Griekspoor]

Thanks John! As you say, the panic was bigger than the actual problems, 
I'll have a check later, but I guess you fixed most if not all 
already... Let us celebrate by throwing in a thought I got while 
attending an, otherwise very boring, bioinformatics talk  yesterday. 
These people had used opensource software to integrate a lot of data in 
a database based on the BioSQL schema. Although, my knowledge is 
limited in this area -John you have much more experience with databases 
isn't it? - I thought it might be nice to keep this setup in mind for 
our "general, xml based" file format we want to setup. The BioSQL 
project already is a shared initiative of all Open-bio projects, and 
located at: http://obda.open-bio.org/  If you go to the webcvs and 
download the tarball, it contains an overview pdf and documentation 
(although limited and no real examples). It might help us setup things 
like annotations and features as well. Perhaps nice to keep in the back 
of our heads...
Cheers,
Alex


Op 21-sep-04 om 22:40 heeft John Timmer het volgende geschreven:

> Because of the momentary panic my careless wording caused, I took a 
> break
> from real work and fixed as much as I could.  Things now build with 
> just a
> few warnings.  I've tried as best as possible to adhere to the new 
> setup,
> but I'm sure there's a couple of spots where I missed something.  If 
> it's
> simple, please fix it and if it's not, please tell me so that I can.
>
> One thing that probably doesn't work right now is the translation 
> method for
> converting a DNA/RNA sequence to a codon sequence.  I should have that 
> fixed
> later tonight.
>
> I'll look over the new structure of the build and fix the bundle 
> issues as
> soon as I can.
>
> John
>
>
> _______________________________________________
> This mind intentionally left blank
>
>
>
>
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                       ** Alexander Griekspoor **
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                 The Netherlands Cancer Institute
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