[Biococoa-dev] BCSymbolSet

John Timmer jtimmer at bellatlantic.net
Thu Mar 10 14:17:35 EST 2005

> Hi,
> i'd like to make the suggestion to make BCSymbolSet a subclass of
> NSMutableSet, to get all set features for free. I for example need the
> allObjects: method for my BCScoringMatrix class.
I think we were going to make BCSymbolSet already.  I think the root class
was going to be non-mutable and hold standard sets, like all nucleotides,
etc.  There was going to be a subclass that was mutable to allow
user-defined sets.  I wasn't involved in coding this, though, so I'm not
sure where things stand.

> to make the first AlignmentTools i would suggest to make a
> BCMultiSequenceTool base class including a NSArray of abstract
> sequences.
That sounds reasonable.

You had implied you had checked something in to the CVS in a previous email
- is that so?  If so, where can I find it?



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