[Biococoa-dev] BCPairwiseAlignment

[Alexander Griekspoor]

Why the need for such categories to add sequence algorithms and not 
just in the BCSequenceAlignment class? The framework is completely 
opensource, so people can just modify the framework right (it would 
also stimulate them to add their additions to the public framework)... 
I like the idea of class methods to instantiate different kinds of 
alignments though!
Cheers,
Alex

On 12-mrt-05, at 13:25, Philipp Seibel wrote:

>
>>> Not sure if I like the name BCAlignmentAlgorithm, it screams for 
>>> typo's ;)  We could have the result named BCAlignmentResult or 
>>> BCSequenceAlignment.
>>>
>> I agree with you. I like the BCSequenceAlignment version.
>
> So there is my new idea:
>
> You can see a alignment-algorithms as convenient constructors of a 
> BCAlignment (or BCSequenceAlignment), so we could have categories for 
> BCAlignment like
>
> @interface BCAlignment ( PairwiseAlignment )
>
> + (BCAlignment *)needlemanWunschAlignment......
> + (BCAlignment *)smithWatermanAlignment....
>
> @end
>
>
> @interface BCAlignment ( MultipleAlignment )
>
> + (BCAlignment *)clustalWAlignment.....
>
> @end
>
> so everybody who wants to add alignment algorithms do that in 
> additions (categories).
>
> Just another idea ....
>
>
> Phil
>
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>
>
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                     ** Alexander Griekspoor **
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