biococoa at bioworxx.com
Sat Mar 12 07:25:34 EST 2005
>> Not sure if I like the name BCAlignmentAlgorithm, it screams for
>> typo's ;) We could have the result named BCAlignmentResult or
> I agree with you. I like the BCSequenceAlignment version.
So there is my new idea:
You can see a alignment-algorithms as convenient constructors of a
BCAlignment (or BCSequenceAlignment), so we could have categories for
@interface BCAlignment ( PairwiseAlignment )
+ (BCAlignment *)needlemanWunschAlignment......
+ (BCAlignment *)smithWatermanAlignment....
@interface BCAlignment ( MultipleAlignment )
+ (BCAlignment *)clustalWAlignment.....
so everybody who wants to add alignment algorithms do that in additions
Just another idea ....
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