[Biococoa-dev] whatsuuup?

Koen van der Drift kvddrift at earthlink.net
Tue Oct 4 19:18:50 EDT 2005

On Oct 3, 2005, at 11:40 PM, Charles Parnot wrote:

> I suppose there would be some positional information, where the  
> sequence are aligned in some specific ways, so an array of  
> sequences + an array of offset should do. The best way to start is  
> to agree on a good, simple but complete and consistent header and  
> then the implementation almost does not matter and can always be  
> modified in the future.

I am trying to figure out what you mean by the array of offset. I  
like to visualize things, so assume we have the following sequences  
that are related:


2. ----GGGCCAGG----


Then the offset array would be like:

0, 4, 2

But it could also be:

-4, 0, -2

Am I on the right track here?

- Koen.

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