[Biococoa-dev] Subversion proposal [correction]

Tue Mar 7 05:00:19 EST 2006

About the wiki... found this in the archives:
http://bioinformatics.org/forums/forum.php?forum_id=3940
Anyone wants to try to get it working?
ALex

On 7-mrt-2006, at 10:57, Alexander Griekspoor wrote:

> Very good, just 2 remarks:
> - My version is not the last version of BioCocoa, it doesn't  
> contain the code to write files, if that could be added, we would  
> be set.
> - We should also transfer a copy of the views I added and the  
> additional support for reading binary strider and GCK files to the  
> trunk:
>>>  The KDTextView is put in the BCAppkit directory, and should in  
>>> theory also be enhanced to work with our native objects
>>> - The EntrezController likewise gets a place in the trunk in the  
>>> approriate folder and should be "fixed" to return BioCocoa objects.
>
> Cheers,
> Alex
>
>
> On 7-mrt-2006, at 10:54, Peter Schols wrote:
>
>> Hi Alex,
>>
>> I love the Wiki idea! It would be a great way to share the To-Do  
>> lists and code snippets indeed! BTW: didn't we have a BioCocoa  
>> wiki already? I seem to remember this vaguely (maybe it was just a  
>> dream ;-)).
>>
>> Regarding the SVN: see my previous post to the list. I think  
>> Charles' approach might be the best for our end users. Keep the  
>> trunk as it is now in CVS and have a tag with your code. People  
>> who want to use the framework just check out the latest tag (=  
>> your version) and they are all set. As you write, we should aim  
>> asap for a BioCocoa 2.0 that only uses our own foundation classes.
>>
>> cheers,
>> peter
>>
>>
>>
>> On 07 Mar 2006, at 10:15, Alexander Griekspoor wrote:
>>
>>> Hi guys,
>>>
>>> Hmmm, from "great stuff" to "polluting sample code" huh, thanks!
>>> So just to clear up things, what I did was add a new, standalone  
>>> xcode project that serves as both source and sample code for 1  
>>> custom foundation and 2 view objects, hence a good name Peter.
>>> Now what I propose to do is the following:
>>> - update the website of BioCocoa ;-)
>>> - post a direct download link with 1) BioCocoa 1.6 and 2) the  
>>> sample code I posted, and explain what it does.
>>> This because many people (including myself like to be able to  
>>> just download a stable release as zip or dmg instead of having to  
>>> svn it.
>>>
>>> Now about that SVN, why don't we indeed give both a place in a  
>>> spot where it's clear those are final versions. This way someone  
>>> who is browsing our SVN can find it somewhere.
>>> Finally its clear that indeed the trunk is what we work on. I  
>>> don't think there's a need to have a BioCocoa 1.7 (say, a future  
>>> classic BioCocoa project), nor a special development space for  
>>> the KDTextView/EntrezController classes. No, what I would do is  
>>> the following:
>>> - The additional code in the BCReader class is merged with the  
>>> new one, which focuses on working with the sequencearray objects  
>>> (Koen started this already I believe).
>>> - The KDTextView is put in the BCAppkit directory, and should in  
>>> theory also be enhanced to work with our native objects
>>> - The EntrezController likewise gets a place in the trunk in the  
>>> approriate folder and should be "fixed" to return BioCocoa objects.
>>>
>>> That's all I think, and of course the website should also list  
>>> these current developments, how to connect to CVS etc etc.
>>> By the way, to bring even another topic up, wasn't it  
>>> BioInformatics who now also features a wiki for each project?
>>> Maybe we can transfer a lot of discussions we want to archive and  
>>> things like the todo list to that, just like Drew and Charles  
>>> have done for the RemoteActivity monitor: http://tb.chem.vu.nl/ 
>>> wiki/index.php/Remote_Activity_Monitor
>>>
>>> Cheers,
>>> Alex
>>>
>>> Ps. Charles, did you get did the other toy I sent you?
>>>
>>>
>>> On 7-mrt-2006, at 9:55, Peter Schols wrote:
>>>
>>>> Oops, sorry. I had not read all BioCocoa-dev emails before  
>>>> replying... (got not enough sleep ;-))
>>>> I now understand what you are aiming at with the sample code,  
>>>> and I agree. We could indeed separate these into different Xcode  
>>>> projects. On the other hand, this might make it a bit more  
>>>> difficult to build these sample projects.
>>>>
>>>>
>>>> On 07 Mar 2006, at 09:47, Peter Schols wrote:
>>>>
>>>>>> I agree with you. I think the framework should be one  
>>>>>> standalone project. This is what other developers will use,  
>>>>>> and I don't think it should be 'polluted' with all kind of  
>>>>>> sample code.
>>>>>
>>>>> Who is talking about sample code?
>>>>>
>>>>
>>>> Disclaimer: http://www.kuleuven.be/cwis/email_disclaimer.htm
>>>>
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>>>>
>>>
>>> *********************************************************
>>>                       ** Alexander Griekspoor **
>>> *********************************************************
>>>                 The Netherlands Cancer Institute
>>>                 Department of Tumorbiology (H4)
>>>           Plesmanlaan 121, 1066 CX, Amsterdam
>>>                     Tel:  + 31 20 - 512 2023
>>>                     Fax:  + 31 20 - 512 2029
>>>                    AIM: mekentosj at mac.com
>>>                     E-mail: a.griekspoor at nki.nl
>>>                 Web: http://www.mekentosj.com
>>>
>>>           LabAssistant - Get your life organized!
>>>           http://www.mekentosj.com/labassistant
>>>
>>> *********************************************************
>>>
>>
>>
>> Disclaimer: http://www.kuleuven.be/cwis/email_disclaimer.htm
>>
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>
> *********************************************************
>                     ** Alexander Griekspoor **
> *********************************************************
>               The Netherlands Cancer Institute
>               Department of Tumorbiology (H4)
>          Plesmanlaan 121, 1066 CX, Amsterdam
>                     Tel:  + 31 20 - 512 2023
>                     Fax:  + 31 20 - 512 2029
>                     AIM: mekentosj at mac.com
>                     E-mail: a.griekspoor at nki.nl
>                 Web: http://www.mekentosj.com
>
> Windows is a 32-bit patch to a 16-bit shell for an 8-bit
> operating system, written for a 4-bit processor by a 2-
> bit company without 1 bit of sense.
>
> *********************************************************
>
>
> _______________________________________________
> Biococoa-dev mailing list
> Biococoa-dev at bioinformatics.org
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*********************************************************
                       ** Alexander Griekspoor **
*********************************************************
                 The Netherlands Cancer Institute
                 Department of Tumorbiology (H4)
           Plesmanlaan 121, 1066 CX, Amsterdam
                     Tel:  + 31 20 - 512 2023
                     Fax:  + 31 20 - 512 2029
                    AIM: mekentosj at mac.com
                     E-mail: a.griekspoor at nki.nl
                 Web: http://www.mekentosj.com

           LabAssistant - Get your life organized!
           http://www.mekentosj.com/labassistant

*********************************************************

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