[Biococoa-dev] biococoa svn and everything

Davide Cittaro davide.cittaro at ifom-ieo-campus.it
Wed Sep 12 04:41:50 EDT 2007

Hi Scott

On Sep 11, 2007, at 9:12 PM, Scott Christley wrote:

> Hello Davide,
> If you send me a patch with your changes, I can apply it to the  
> repository.  You would need to be given developer access in order  
> to commit the changes yourself.

After a long reading, I've decided to send the patch.
It is not clear which version I had to patch... I've checked  
BCSequenceIO files and they don't look different in various 2.x  
versions (-> .dmg, trunk, branch 2.0 and release-2.0), BTW I've done  
the patch against the downloadable .dmg version.
Essentially the changes are:
in BCSequenceReader.h:
MACVECTOR_HEADER struct definition (to get MV file info)
(BCSequenceArray *)readMacVectorFile:(NSString *)textFile method  

in BCSequenceReader.m:
NSHFSTypeOfFile "scanning" to allow reading of 'NUCL' or 'PROT' files  
(in the same manner you do for GCK files).
(BCSequenceArray *)readMacVectorFile:(NSString *)textFile method  

Davide Cittaro
HPC and Bioinformatics Systems @ Informatics Core

IFOM - Istituto FIRC di Oncologia Molecolare
via adamello, 16
20139 Milano

tel.: +39(02)574303007
e-mail: davide.cittaro at ifom-ieo-campus.it

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.bioinformatics.org/pipermail/biococoa-dev/attachments/20070912/4d662a7b/attachment.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: BioCocoa-MacVector.patch
Type: application/octet-stream
Size: 4700 bytes
Desc: not available
URL: <http://www.bioinformatics.org/pipermail/biococoa-dev/attachments/20070912/4d662a7b/attachment.obj>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.bioinformatics.org/pipermail/biococoa-dev/attachments/20070912/4d662a7b/attachment-0001.html>

More information about the Biococoa-dev mailing list