[Biococoa-dev] ultraconserved sarray info
paolo_siniselli at yahoo.it
Wed Jul 16 17:40:13 EDT 2008
How can I combine all the suffix array files for an organism into a single suffix array so that mcp_sarray is just run once?
I'd like to compare two sarray files for each two organisms comparison such as human vs mouse...
--- Lun 14/7/08, Scott Christley <schristley at mac.com> ha scritto:
Da: Scott Christley <schristley at mac.com>
Oggetto: Re: [Biococoa-dev] Biococoa2 Install issue
A: paolo_siniselli at yahoo.it
Cc: "biococoa" <biococoa-dev at bioinformatics.org>
Data: Lunedì 14 luglio 2008, 23:27
There is an environment configuration script that comes with GNUstep, you need to "source" this script to setup the GNUstep environment before compiling or running applications. Maybe something like this:
As a side note, some of the reports I've heard from people is that the GNUstep which comes with Debian is old and has bugs, I cannot say how well it will work with BioCocoa.
On Jul 14, 2008, at 2:06 PM, paolo siniselli wrote:
I'm trying to install BioCocoa2 on my Linux Debian (Lenny)
I've already installed GNUstep
So I went into truck/GNUstep folder and I typed "make install" but I received an error back:
GNUmakefile:27: *** You need to run the GNUstep configuration script before compiling!. Stop.
Those are the files in GNUstep directory:
aminoacids.plist GNUmakefile.postamble GNUmakefile.subproj
GNUmakefile GNUmakefile.preamble nucleotides.plist
And those are the file in truck direcotry:
BCAppKit BioCocoa.xcodeproj Examples Publications.txt
BCFoundation Copying.txt GNUstep Readme.txt
BC.icns DeveloperDocs license.txt Resources
BioCocoa_Prefix.h Documentation main.c Tests
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