[Biococoa-dev] BioCocoa linux install

paolo siniselli paolo_siniselli at yahoo.it
Wed Mar 26 13:24:21 EDT 2008


Ok, I installed BioCocoa 2 and ultraconserved tools
witho no errors
But now, when I try to use construct_sarray I get this
error:

debian:/home/paolo/biococoa_ultraconserved/Ultraconserved.r132/trunk/shared_obj#
ls
construct_sarray    intersect_mcp.d  mcp_sarray.o 
print_sarray    trim_mcp.d   union_mcp.o
construct_sarray.d  intersect_mcp.o  print_mcp    
print_sarray.d  trim_mcp.o
construct_sarray.o  mcp_sarray       print_mcp.d  
print_sarray.o  union_mcp
intersect_mcp       mcp_sarray.d     print_mcp.o  
trim_mcp        union_mcp.d

debian:/home/paolo/biococoa_ultraconserved/Ultraconserved.r132/trunk/shared_obj#
./construct_sarray /home/paolo/S_Cerevisae\
Genome/chr1.fa
./construct_sarray: error while loading shared
libraries: libBioCocoa.so.0: cannot open shared object
file: No such file or directory

debian:/home/paolo/biococoa_ultraconserved/Ultraconserved.r132/trunk/shared_obj#
locate libBioCocoa.so.0
/home/paolo/Biococoa2/GNUstep/BioCocoa.framework/Versions/A/libBioCocoa.so.0
/home/paolo/Biococoa2/GNUstep/BioCocoa.framework/Versions/A/libBioCocoa.so.0.0.1
/usr/local/lib/GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/A/libBioCocoa.so.0
/usr/local/lib/GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/A/libBioCocoa.so.0.0.1
/usr/local/lib/GNUstep/Local/Library/Libraries/libBioCocoa.so.0
/usr/local/lib/GNUstep/Local/Library/Libraries/libBioCocoa.so.0.0.1

Any suggestions?
Thank for your help
Paolo



--- Scott Christley <schristley at mac.com> wrote:


> ... "make install",
> that will compile  
> and install the BioCocoa library.  Then you should
> be able to "make"  
> the Ultraconserved project.
> 
> cheers
> Scott
R


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