[Biococoa-dev] BioCocoa linux install

Scott Christley schristley at mac.com
Wed Mar 26 14:40:07 EDT 2008


Your GNUstep environment is likely not setup properly in that  
terminal window.  It should have added the appropriate paths to the  
LD_LIBRARY_PATH environment variable so that it finds the shared  
libraries.  Alternatively you can manually add /usr/local/GNUstep/ 
Local/Library/Libraries to your LD_LIBRARY_PATH environment variable,  
but I don't recommend do it manually because there are other settings  
required which may cause things to fail unexpectedly.

cheers
Scott

On Mar 26, 2008, at 1:24 PM, paolo siniselli wrote:

> Ok, I installed BioCocoa 2 and ultraconserved tools
> witho no errors
> But now, when I try to use construct_sarray I get this
> error:
>
> debian:/home/paolo/biococoa_ultraconserved/Ultraconserved.r132/ 
> trunk/shared_obj#
> ls
> construct_sarray    intersect_mcp.d  mcp_sarray.o
> print_sarray    trim_mcp.d   union_mcp.o
> construct_sarray.d  intersect_mcp.o  print_mcp
> print_sarray.d  trim_mcp.o
> construct_sarray.o  mcp_sarray       print_mcp.d
> print_sarray.o  union_mcp
> intersect_mcp       mcp_sarray.d     print_mcp.o
> trim_mcp        union_mcp.d
>
> debian:/home/paolo/biococoa_ultraconserved/Ultraconserved.r132/ 
> trunk/shared_obj#
> ./construct_sarray /home/paolo/S_Cerevisae\
> Genome/chr1.fa
> ./construct_sarray: error while loading shared
> libraries: libBioCocoa.so.0: cannot open shared object
> file: No such file or directory
>
> debian:/home/paolo/biococoa_ultraconserved/Ultraconserved.r132/ 
> trunk/shared_obj#
> locate libBioCocoa.so.0
> /home/paolo/Biococoa2/GNUstep/BioCocoa.framework/Versions/A/ 
> libBioCocoa.so.0
> /home/paolo/Biococoa2/GNUstep/BioCocoa.framework/Versions/A/ 
> libBioCocoa.so.0.0.1
> /usr/local/lib/GNUstep/Local/Library/Frameworks/BioCocoa.framework/ 
> Versions/A/libBioCocoa.so.0
> /usr/local/lib/GNUstep/Local/Library/Frameworks/BioCocoa.framework/ 
> Versions/A/libBioCocoa.so.0.0.1
> /usr/local/lib/GNUstep/Local/Library/Libraries/libBioCocoa.so.0
> /usr/local/lib/GNUstep/Local/Library/Libraries/libBioCocoa.so.0.0.1
>
> Any suggestions?
> Thank for your help
> Paolo
>
>
>
> --- Scott Christley <schristley at mac.com> wrote:
>
>
>> ... "make install",
>> that will compile
>> and install the BioCocoa library.  Then you should
>> be able to "make"
>> the Ultraconserved project.
>>
>> cheers
>> Scott
> R
>
>
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