[Biococoa-dev] BioCocoa linux install
Scott Christley
schristley at mac.com
Thu Mar 27 15:29:40 EDT 2008
Hello Paolo,
On Mar 27, 2008, at 1:08 PM, paolo siniselli wrote:
> debian:/home/kei/biococoa_ultraconserved/Ultraconserved.r132/trunk/
> obj#
> . /usr/share/GNUstep/Makefiles/GNUstep.sh
Correct, sourcing that script sets up the GNUstep environment. If
you do not want to type it each time you open a terminal window, you
can add it to your .bashrc or .bash_profile script in your home
directory.
>
> .:3: validity error : Validation failed: no DTD found
> !
> <plist version="0.9">
> ^
> .:3: validity error : Validation failed: no DTD found
> !
> <plist version="0.9">
> ^
> .:3: validity error : Validation failed: no DTD found
> !
> <plist version="0.9">
> ^
These messages do not look good. Seems to indicate that something is
wrong with the XML parsing in GNUstep. It is necessary for the XML
parsing to be enabled and functional with GNUstep in order for
BioCocoa to work.
>
> I don't know what those errors mean, and I don't know
> know about the parameter f and r which ared used in
> construct_sarray.
The f/r parameter is to specify just the forward or reverse strand to
be used. It is an optional parameter and normally do not specify so
that both strands are used.
cheers
Scott
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