[Biodevelopers] Is it source available for blastall

Joe Landman landman at scalableinformatics.com
Wed Oct 9 22:53:51 EDT 2002

Hi Bala:

  Look on http://www.ncbi.nlm.nih.gov for the BLAST (standalone) bit.  

  It looks to me like you may have some command line parameter problems,
or problems with you .ncbirc file.  The data.tar.Z file on the ftp site
contains the scoring matrices, and the tarball contains the code.

  What are you running, including the complete command line?


On Wed, 2002-10-09 at 22:05, Bala wrote:
> Hi All,
>         I am new to this list,
> I wondering is it source available
> for blastall executable from NCBI site.
> I am getting some error with the one
> of the parameter(Matrix value) to 
> blastall.
>    If that default file BLOSUM62 is 
> available locally, then it is working,
> if I am running from some other location
> and specifing that file location, then it 
> is giving error.
> [blastall] ERROR: gi|532319|pir|TVFV2E|TVFV2E:
> BlastKarlinBlkGappedCalc: test/BLOSUM62 is not a
> supported matrix
> any suggestion! help!
> -bala-
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Joseph Landman, Ph.D
email: landman at scalableinformatics.com
web  : http://scalableinformatics.com
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