[Biodevelopers] Urgent Help

info at amityindia.com info at amityindia.com
Thu Feb 6 00:22:23 EST 2003


Hi,

Nice to receive your mail. Our technical person is not in the station.
Once he comeback we will try to solve your problem

Regards
Antony Raj G
Bioinformatics Institute of India.
Chennai.

Original Message:
-----------------
From: Gavai, Anand Anand.Gavai at wur.nl
Date: Wed, 05 Feb 2003 16:03:29 +0100
To: biodevelopers at bioinformatics.org
Subject: [Biodevelopers] Urgent Help


Hi Everybody,
I am trying to install the bioperl-ext module from cvs.bioperl.org site
because I want to integrate the Staden package with our bioSQL database,
now as per the README file I tried to install all the extension packages
but was unable to do that, so I chose to install the individual packages
by following the steps which were mentioned
i.e. 
cd Bio/Ext/Align
perl Makefile.PL
make
make test
make install

this was installed successfully but then I selected to install the SeqIO
for the staden package and as mentioned in the README file it asked for
/usr/local/lib and usr/local/include/io_lib
(Note: I have already installed the io_lib package from
ftp://ftp.mrc-lmb.cam.ac.uk/pub/staden/io_lib)
I was able to find the Read.h file in io_lib/read directory but I could not
find the "libread" library which is mentioned in the README file, I even
tried to give the path of the Staden package lib directory but its still
not able to install it. Where is that "libread" file located. 

Any other options or opinions are most welcome.

Thanks in Advance,

Anand Gavai
MSc Bioinformatics
Wageningen University
Wageningen,
The Netherlands.








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