[Biodevelopers] binding energy calculation

[Patrick McConnell]

Hello.

Does anyone know of a tool to calculate the binding affinity between
between a short mRNA probe and a gene?  I am familiar with mfold and the
vienna rna package, which perform similar calculations (correct me if I am
wrong here), but they calculate energies for self-binding.

Thanks in advance,

-Patrick

mccon012 at mc.dukee.du
Duke Bioinformatics Shared Resource