[Biodevelopers] binding energy calculation

[Titus Brown]

-> Does anyone know of a tool to calculate the binding affinity between
-> between a short mRNA probe and a gene?  I am familiar with mfold and the
-> vienna rna package, which perform similar calculations (correct me if I am
-> wrong here), but they calculate energies for self-binding.

Google for 'melting temperature' or 'annealing' instead.  The first hit
is this:

	http://www.retrogen.com/index/melting_template.htm

cheers,
--titus