[Biodevelopers] BIND API

Dan Bolser dmb at mrc-dunn.cam.ac.uk
Thu Feb 24 13:37:12 EST 2005

On Thu, 24 Feb 2005, Siddhartha Basu wrote:

>Hi Dan,
>I am trying to do same kind of analysis but haven't made any RDBMS 
>solution yet. Will highly appreciate if you share.

I will hapily send you the files. Should / could I put them some where

Some ideas...

* the BIND sourceforge site 
* into biosql project
* a bioinformatics.org project

Any suggestions?

>Dan Bolser wrote:
>> On Wed, 23 Feb 2005, rich wrote:
>>>Hi, i can't seem to find any bioperl modules and i'm pretty sure the 
>>>seqhound api doesn't deal with the BIND database. Anyone got any neat 
>>>automated way of querying the db
>>>short of downloading the text files form the BIND site,
>> I have been using the text files to build a local mysql instance of the
>> BIND data. I found this a very useful and convenient way to construct
>> complex queries over the data.
>> If you like I can give you my perl parsers and schema, as I worked quite
>> hard to document the 'build' pipeline (although it is all manually
>> executed in about 5-10 steps).
>> Dan.
>>>Biodevelopers mailing list
>>>Biodevelopers at bioinformatics.org
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