[cmview-users] Problem running various pdb files+dssp error

[M. F.]

Hi there,

I have been struggling with running cmview now for awhile, I am very happy to findout about this group and ask my question here. 

I have changed my generated pdb file format, already for several times and it is still giving a weird sort of graph and loosing some info probably. This is the error I get and the result image is attached. Please let me know if you need more info. Thanks in advance!


Maryam% cmview.sh
Starting CMView 1.1.1
Loading configuration file cmview.cfg
Using temporary directory /var/folders/JN/JNvt1vfbH4CRpqOfuMtdQk+++TI/-Tmp-/
Connecting to PyMol...
Starting PyMol...
Connected.
Using DSSP executable ../dssp-2.1.0/src
Loading from Pdb file
Filename:    /Users/Maryam/Desktop/10ns-3.pdb
Model serial:    1
Chain code:    NULL
Contact type:    Ca
Dist. cutoff:    8.0
Min. Seq. Sep.:    none
Max. Seq. Sep.:    none
(Re)assigning secondary structure using DSSP
Failed to assign secondary structure: Cannot run program "../dssp-2.1.0/src": error=13, Permission denied
Warning: 89 unobserved or non-standard residues
Warning: Chain NULL is now called A
Contact map 2kunA loaded.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.bioinformatics.org/pipermail/cmview-users/attachments/20130606/0128509a/attachment-0001.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Screen shot 2013-06-06 at 10.16.15 AM.png
Type: image/png
Size: 165220 bytes
Desc: not available
URL: <http://www.bioinformatics.org/pipermail/cmview-users/attachments/20130606/0128509a/attachment-0001.png>