[ghemical-devel] installation problems...glade?
Cheri M Turman
Cheri.M.Turman@uth.tmc.edu
Fri, 05 Nov 2004 18:38:48 -0600
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Hi all,
I am trying to install ghemical with mpqc support on my Redhat
Enterprise WS3 system. I am having an issue in the make process. It
seems to be a problem with glade. I got a message saying that the file
glade.h was not in the src/target3/glade directory. I have glade
installed so I tried making a symbolic link to this directory. Make
went a little further this time but still needed other glade files (ie.
glade-xml.h, etc). I made symlinks to all these files but still make is
having problems. I have attached the messages from the console below.
Is there something else I am missing? Any help would be grateful!
Thanks,
Cheri
[root@dhcp-169-77 ghemical-1.01]# make
make[1]: Entering directory `/home/cheri/PROGRAMS/ghemical-1.01/openbabel'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/cheri/PROGRAMS/ghemical-1.01/openbabel'
make[1]: Entering directory `/home/cheri/PROGRAMS/ghemical-1.01/miniMOPAC'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/cheri/PROGRAMS/ghemical-1.01/miniMOPAC'
make[1]: Entering directory `/home/cheri/PROGRAMS/ghemical-1.01/src/common'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/cheri/PROGRAMS/ghemical-1.01/src/common'
make[1]: Entering directory
`/home/cheri/PROGRAMS/ghemical-1.01/src/graphics'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/cheri/PROGRAMS/ghemical-1.01/src/graphics'
make[1]: Entering directory
`/home/cheri/PROGRAMS/ghemical-1.01/src/target3/glad e'
g++ -c -g -O2 -fno-exceptions -I../../../src/target3
-I../../../src/graphics -I ../../../src/common -I../../../openbabel
-I/home/cheri/PROGRAMS/ghemical-1.01/sr c -I/usr/include/gtk-1.2
-I/usr/include/glib-1.2 -I/usr/lib64/glib/include -I/us r/X11R6/include
-I/usr/include/gnome-1.0 -DNEED_GNOMESUPPORT_H -I/usr/lib64/gnom
e-libs/include -I/usr/include/gtk-1.2 -I/usr/include/glib-1.2
-I/usr/lib64/glib/ include -I/usr/X11R6/include ./geomopt_dialog.cpp
In file included from ../../../src/target3/glade/glade.h:27,
from ../../../src/target3/glade_dialog.h:13,
from geomopt_dialog.h:13,
from geomopt_dialog.cpp:10:
../../../src/target3/glade/glade-init.h:31: syntax error before `void'
In file included from /usr/include/gtk-1.2/gdk/gdk.h:31,
from /usr/include/gtk-1.2/gtk/gtkwidget.h:30,
from ../../../src/target3/glade/glade-xml.h:26,
from ../../../src/target3/glade/glade.h:28,
from ../../../src/target3/glade_dialog.h:13,
from geomopt_dialog.h:13,
from geomopt_dialog.cpp:10:
/usr/include/gtk-1.2/gdk/gdktypes.h:45: syntax error before string constant
In file included from /usr/include/gtk-1.2/gdk/gdk.h:31,
from /usr/include/gtk-1.2/gtk/gtkwidget.h:30,
from ../../../src/target3/glade/glade-xml.h:26,
from ../../../src/target3/glade/glade.h:28,
from ../../../src/target3/glade_dialog.h:13,
from geomopt_dialog.h:13,
from geomopt_dialog.cpp:10:
/usr/include/gtk-1.2/gdk/gdktypes.h:937: 'GdkAtom' is used as a type, but is
not defined as a type.
/usr/include/gtk-1.2/gdk/gdktypes.h:1153: 'GdkAtom' is used as a type,
but is
not defined as a type.
/usr/include/gtk-1.2/gdk/gdktypes.h:1163: 'GdkAtom' is used as a type,
but is
not defined as a type.
/usr/include/gtk-1.2/gdk/gdktypes.h:1164: 'GdkAtom' is used as a type,
but is
not defined as a type.
/usr/include/gtk-1.2/gdk/gdktypes.h:1165: 'GdkAtom' is used as a type,
but is
not defined as a type.
/usr/include/gtk-1.2/gdk/gdktypes.h:1188: 'GdkAtom' is used as a type,
but is
not defined as a type.
/usr/include/gtk-1.2/gdk/gdktypes.h:1262: syntax error before `}' token
In file included from /usr/include/gtk-1.2/gtk/gtkwidget.h:30,
from ../../../src/target3/glade/glade-xml.h:26,
from ../../../src/target3/glade/glade.h:28,
from ../../../src/target3/glade_dialog.h:13,
from geomopt_dialog.h:13,
from geomopt_dialog.cpp:10:
/usr/include/gtk-1.2/gdk/gdk.h:254: `GdkAtom' was not declared in this scope
/usr/include/gtk-1.2/gdk/gdk.h:254: syntax error before `,' token
/usr/include/gtk-1.2/gdk/gdk.h:275: syntax error before `*' token
/usr/include/gtk-1.2/gdk/gdk.h:743: type specifier omitted for parameter `
GdkAtom'
/usr/include/gtk-1.2/gdk/gdk.h:743: syntax error before `,' token
/usr/include/gtk-1.2/gdk/gdk.h:746: `GdkAtom' was not declared in this scope
/usr/include/gtk-1.2/gdk/gdk.h:746: syntax error before `)' token
/usr/include/gtk-1.2/gdk/gdk.h:748: type specifier omitted for parameter `
GdkAtom'
/usr/include/gtk-1.2/gdk/gdk.h:748: syntax error before `,' token
/usr/include/gtk-1.2/gdk/gdk.h:753: type specifier omitted for parameter `
GdkAtom'
/usr/include/gtk-1.2/gdk/gdk.h:753: syntax error before `*' token
/usr/include/gtk-1.2/gdk/gdk.h:756: type specifier omitted for parameter `
GdkAtom'
/usr/include/gtk-1.2/gdk/gdk.h:756: syntax error before `,' token
/usr/include/gtk-1.2/gdk/gdk.h:761: `GdkAtom' was not declared in this scope
/usr/include/gtk-1.2/gdk/gdk.h:761: syntax error before `,' token
/usr/include/gtk-1.2/gdk/gdk.h:766: type specifier omitted for parameter `
GdkAtom'
/usr/include/gtk-1.2/gdk/gdk.h:766: syntax error before `*' token
/usr/include/gtk-1.2/gdk/gdk.h:772: syntax error before `*' token
/usr/include/gtk-1.2/gdk/gdk.h:774: `GdkAtom' was not declared in this scope
/usr/include/gtk-1.2/gdk/gdk.h:774: syntax error before `)' token
/usr/include/gtk-1.2/gdk/gdk.h:776: type specifier omitted for parameter `
GdkAtom'
/usr/include/gtk-1.2/gdk/gdk.h:776: syntax error before `,' token
/usr/include/gtk-1.2/gdk/gdk.h:786: type specifier omitted for parameter `
GdkAtom'
/usr/include/gtk-1.2/gdk/gdk.h:786: syntax error before `,' token
/usr/include/gtk-1.2/gdk/gdk.h:793: type specifier omitted for parameter `
GdkAtom'
/usr/include/gtk-1.2/gdk/gdk.h:793: syntax error before `)' token
In file included from ../../../src/target3/glade/glade-xml.h:26,
from ../../../src/target3/glade/glade.h:28,
from ../../../src/target3/glade_dialog.h:13,
from geomopt_dialog.h:13,
from geomopt_dialog.cpp:10:
/usr/include/gtk-1.2/gtk/gtkwidget.h:163: 'GdkAtom' is used as a type,
but is
not defined as a type.
/usr/include/gtk-1.2/gtk/gtkwidget.h:164: 'GdkAtom' is used as a type,
but is
not defined as a type.
/usr/include/gtk-1.2/gtk/gtkwidget.h:165: 'GdkAtom' is used as a type,
but is
not defined as a type.
In file included from ../../../src/target3/glade/glade.h:28,
from ../../../src/target3/glade_dialog.h:13,
from geomopt_dialog.h:13,
from geomopt_dialog.cpp:10:
../../../src/target3/glade/glade-xml.h:38: syntax error before `typedef'
../../../src/target3/glade/glade-xml.h:44: 'GObject' is used as a type,
but is
not defined as a type.
../../../src/target3/glade/glade-xml.h:53: 'GObjectClass' is used as a type,
but is not defined as a type.
../../../src/target3/glade/glade-xml.h:56: `lookup_type' was not declared in
this scope
../../../src/target3/glade/glade-xml.h:56: `GladeXML' was not declared
in this
scope
../../../src/target3/glade/glade-xml.h:56: `self' was not declared in this
scope
../../../src/target3/glade/glade-xml.h:56: syntax error before `char'
../../../src/target3/glade/glade-xml.h:56: ISO C++ forbids declaration of `
GType' with no type
../../../src/target3/glade/glade-xml.h:56: function `int GType(...)' is
initialized like a variable
../../../src/target3/glade/glade-xml.h:59: syntax error before `)' token
../../../src/target3/glade/glade-xml.h:60: syntax error before `*' token
../../../src/target3/glade/glade-xml.h:62: syntax error before `*' token
../../../src/target3/glade/glade-xml.h:65: `GladeXML' was not declared
in this
scope
../../../src/target3/glade/glade-xml.h:65: `self' was not declared in this
scope
../../../src/target3/glade/glade-xml.h:65: syntax error before `char'
../../../src/target3/glade/glade-xml.h:69: `GladeXML' was not declared
in this
scope
../../../src/target3/glade/glade-xml.h:69: `self' was not declared in this
scope
../../../src/target3/glade/glade-xml.h:70: syntax error before `char'
../../../src/target3/glade/glade-xml.h:72: `GladeXML' was not declared
in this
scope
../../../src/target3/glade/glade-xml.h:72: `self' was not declared in this
scope
../../../src/target3/glade/glade-xml.h:73: syntax error before `char'
../../../src/target3/glade/glade-xml.h:82: `GladeXML' was not declared
in this
scope
../../../src/target3/glade/glade-xml.h:82: `self' was not declared in this
scope
../../../src/target3/glade/glade-xml.h:82: variable or field `
glade_xml_signal_autoconnect' declared void
../../../src/target3/glade/glade-xml.h:88: type specifier omitted for
parameter
`GObject'
../../../src/target3/glade/glade-xml.h:88: syntax error before `*' token
../../../src/target3/glade/glade-xml.h:99: `GladeXML' was not declared
in this
scope
../../../src/target3/glade/glade-xml.h:99: `self' was not declared in this
scope
../../../src/target3/glade/glade-xml.h:100: syntax error before `*' token
../../../src/target3/glade/glade-xml.h:104: `GladeXML' was not declared
in this
scope
../../../src/target3/glade/glade-xml.h:104: `self' was not declared in this
scope
../../../src/target3/glade/glade-xml.h:105: syntax error before `,' token
../../../src/target3/glade/glade-xml.h:109: `GladeXML' was not declared
in this
scope
../../../src/target3/glade/glade-xml.h:109: `self' was not declared in this
scope
../../../src/target3/glade/glade-xml.h:110: syntax error before `char'
../../../src/target3/glade/glade-xml.h:111: `GladeXML' was not declared
in this
scope
../../../src/target3/glade/glade-xml.h:111: `self' was not declared in this
scope
../../../src/target3/glade/glade-xml.h:112: syntax error before `char'
../../../src/target3/glade/glade-xml.h:114: `GladeXML' was not declared
in this
scope
../../../src/target3/glade/glade-xml.h:114: `self' was not declared in this
scope
../../../src/target3/glade/glade-xml.h:115: syntax error before `*' token
../../../src/target3/glade/glade-xml.h:119: syntax error before `*' token
../../../src/target3/glade/glade-xml.h:123: `GladeXML' was not declared
in this
scope
../../../src/target3/glade/glade-xml.h:123: `xml' was not declared in this
scope
../../../src/target3/glade/glade-xml.h:124: syntax error before `*' token
In file included from geomopt_dialog.h:13,
from geomopt_dialog.cpp:10:
../../../src/target3/glade_dialog.h:17: syntax error before `{' token
../../../src/target3/glade_dialog.h:26: destructors must be member functions
../../../src/target3/glade_dialog.h:26: virtual outside class declaration
../../../src/target3/glade_dialog.h:27: syntax error before `}' token
In file included from geomopt_dialog.cpp:10:
geomopt_dialog.h:18: syntax error before `{' token
geomopt_dialog.h:27: syntax error before `public'
geomopt_dialog.h:30: destructors must be member functions
geomopt_dialog.h:36: syntax error before `}' token
In file included from /usr/include/gtk-1.2/gtk/gtkdnd.h:33,
from /usr/include/gtk-1.2/gtk/gtk.h:56,
from ../../../src/target3/t3views.h:24,
from ../../../src/target3/t3docv.h:22,
from ../../../src/target3/t3qm1docv.h:19,
from geomopt_dialog.cpp:12:
/usr/include/gtk-1.2/gtk/gtkselection.h:62: 'GdkAtom' is used as a type,
but is
not defined as a type.
/usr/include/gtk-1.2/gtk/gtkselection.h:72: type specifier omitted for
parameter `GdkAtom'
/usr/include/gtk-1.2/gtk/gtkselection.h:72: syntax error before `,' token
/usr/include/gtk-1.2/gtk/gtkselection.h:79: type specifier omitted for
parameter `GdkAtom'
/usr/include/gtk-1.2/gtk/gtkselection.h:79: syntax error before `)' token
/usr/include/gtk-1.2/gtk/gtkselection.h:81: type specifier omitted for
parameter `GdkAtom'
/usr/include/gtk-1.2/gtk/gtkselection.h:81: syntax error before `,' token
/usr/include/gtk-1.2/gtk/gtkselection.h:87: type specifier omitted for
parameter `GdkAtom'
/usr/include/gtk-1.2/gtk/gtkselection.h:87: syntax error before `,' token
/usr/include/gtk-1.2/gtk/gtkselection.h:90: type specifier omitted for
parameter `GdkAtom'
/usr/include/gtk-1.2/gtk/gtkselection.h:90: syntax error before `,' token
/usr/include/gtk-1.2/gtk/gtkselection.h:94: type specifier omitted for
parameter `GdkAtom'
/usr/include/gtk-1.2/gtk/gtkselection.h:94: syntax error before `,' token
/usr/include/gtk-1.2/gtk/gtkselection.h:98: type specifier omitted for
parameter `GdkAtom'
/usr/include/gtk-1.2/gtk/gtkselection.h:98: syntax error before `,' token
/usr/include/gtk-1.2/gtk/gtkselection.h:104: type specifier omitted for
parameter `GdkAtom'
/usr/include/gtk-1.2/gtk/gtkselection.h:104: syntax error before `,' token
In file included from /usr/include/gtk-1.2/gtk/gtk.h:56,
from ../../../src/target3/t3views.h:24,
from ../../../src/target3/t3docv.h:22,
from ../../../src/target3/t3qm1docv.h:19,
from geomopt_dialog.cpp:12:
/usr/include/gtk-1.2/gtk/gtkdnd.h:57: type specifier omitted for parameter `
GdkAtom'
/usr/include/gtk-1.2/gtk/gtkdnd.h:57: syntax error before `,' token
In file included from /usr/include/gnome-1.0/libgnome/libgnome.h:28,
from /usr/include/gnome-1.0/gnome.h:16,
from ../../../src/target3/t3views.h:26,
from ../../../src/target3/t3docv.h:22,
from ../../../src/target3/t3qm1docv.h:19,
from geomopt_dialog.cpp:12:
/usr/include/gnome-1.0/libgnome/gnome-i18n.h:31:1: warning: "gettext"
redefined
In file included from
/usr/include/c++/3.2.3/x86_64-redhat-linux/bits/c++locale. h:39,
from /usr/include/c++/3.2.3/bits/localefwd.h:46,
from /usr/include/c++/3.2.3/ios:48,
from /usr/include/c++/3.2.3/ostream:45,
from /usr/include/c++/3.2.3/iostream:45,
from ../../../src/common/typedef.h:20,
from ../../../src/common/conjgrad.h:20,
from ../../../src/common/model.h:23,
from ../../../src/graphics/docview.h:37,
from ../../../src/target3/t3docv.h:21,
from ../../../src/target3/t3qm1docv.h:19,
from geomopt_dialog.cpp:12:
/usr/include/libintl.h:108:1: warning: this is the location of the
previous defi nition
In file included from /usr/include/gnome-1.0/libgnome/libgnome.h:28,
from /usr/include/gnome-1.0/gnome.h:16,
from ../../../src/target3/t3views.h:26,
from ../../../src/target3/t3docv.h:22,
from ../../../src/target3/t3qm1docv.h:19,
from geomopt_dialog.cpp:12:
/usr/include/gnome-1.0/libgnome/gnome-i18n.h:32:1: warning: "dgettext"
redefined
In file included from
/usr/include/c++/3.2.3/x86_64-redhat-linux/bits/c++locale. h:39,
from /usr/include/c++/3.2.3/bits/localefwd.h:46,
from /usr/include/c++/3.2.3/ios:48,
from /usr/include/c++/3.2.3/ostream:45,
from /usr/include/c++/3.2.3/iostream:45,
from ../../../src/common/typedef.h:20,
from ../../../src/common/conjgrad.h:20,
from ../../../src/common/model.h:23,
from ../../../src/graphics/docview.h:37,
from ../../../src/target3/t3docv.h:21,
from ../../../src/target3/t3qm1docv.h:19,
from geomopt_dialog.cpp:12:
/usr/include/libintl.h:110:1: warning: this is the location of the
previous defi nition
In file included from /usr/include/c++/3.2.3/backward/strstream:51,
from geomopt_dialog.cpp:19:
/usr/include/c++/3.2.3/backward/backward_warning.h:32:2: warning:
#warning This file includes at least one deprecated or antiquated
header. Please consider usin g one of the 32 headers found in section
17.4.1.2 of the C++ standard. Examples include substituting the <X>
header for the <X.h> header for C++ includes, or <s stream> instead of
the deprecated header <strstream.h>. To disable this warning use
-Wno-deprecated.
geomopt_dialog.cpp:24: invalid use of undefined type `class geomopt_dialog'
geomopt_dialog.h:17: forward declaration of `class geomopt_dialog'
geomopt_dialog.cpp: In constructor `geomopt_dialog::geomopt_dialog()':
geomopt_dialog.cpp:24: class `geomopt_dialog' does not have any field
named `
glade_dialog'
geomopt_dialog.cpp:26: `dialog' undeclared (first use this function)
geomopt_dialog.cpp:26: (Each undeclared identifier is reported only once for
each function it appears in.)
geomopt_dialog.cpp:26: `xml' undeclared (first use this function)
geomopt_dialog.cpp: At global scope:
geomopt_dialog.cpp:88: invalid use of undefined type `class geomopt_dialog'
geomopt_dialog.h:17: forward declaration of `class geomopt_dialog'
geomopt_dialog.cpp:92: invalid use of undefined type `class geomopt_dialog'
geomopt_dialog.h:17: forward declaration of `class geomopt_dialog'
geomopt_dialog.cpp: In member function `void
geomopt_dialog::handler_Destroy(GtkWidget*, void*)':
geomopt_dialog.cpp:93: `ref' undeclared (first use this function)
geomopt_dialog.cpp:93: syntax error before `)' token
geomopt_dialog.cpp: At global scope:
geomopt_dialog.cpp:100: invalid use of undefined type `class geomopt_dialog'
geomopt_dialog.h:17: forward declaration of `class geomopt_dialog'
geomopt_dialog.cpp: In member function `void
geomopt_dialog::handler_ButtonOK(GtkWidget*, void*)':
geomopt_dialog.cpp:101: syntax error before `)' token
geomopt_dialog.cpp: At global scope:
geomopt_dialog.cpp:189: invalid use of undefined type `class geomopt_dialog'
geomopt_dialog.h:17: forward declaration of `class geomopt_dialog'
geomopt_dialog.cpp: In member function `void
geomopt_dialog::handler_ButtonCancel(GtkWidget*, void*)':
geomopt_dialog.cpp:190: syntax error before `)' token
make[1]: *** [geomopt_dialog.o] Error 1
make[1]: Leaving directory
`/home/cheri/PROGRAMS/ghemical-1.01/src/target3/glade '
make: *** [all] Error 1
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Cheri M. Turman
Graduate Student
University of Texas-Houston Medical School
6431 Fannin
Houston, TX 77030 USA
e-mail: cheri.m.turman@uth.tmc.edu
Ph.: 713-500-6126
Fax: 713-500-0652
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