[Guiblast-devel] Assistance

[hua pan]

Michael:

This is Hua. I downloaded the blast program from Sebastian's project page: 
http://bioinformatics.org/project/?group_id=193 , I also tried to download 
from ftp://ftp.ncbi.nih.gov/blast/executables/ , but I can not finish 
downloading, it's not responding in the end.

In addition, I also downloaded biopython-1.10.win-py2.2, 
egenix-mx-base-2.0.4.win32-py2.2, Python-2.2, PythonCardPrototype-0.7.win32, 
wxPythonWin32-2.4.0.7-Py22.

I think we need to develop in the same version of those stuff and update 
with new version later on. Sebastian, please correct me and add your 
opinion.

As to Sebastian's question,
****Could you please tell me blast parameters to make different strict or 
lax search?
For example: Making "word" parameter bigger, the search is more specific. I 
would like to know more about this. Anyway, this could be resolved with 
several tries (try and error).

I can ask the speaker later on. I also search on the web, will the following 
be any help?
http://www.ncbi.nih.gov/Web/Newsltr/Spring00/blastlab.html
http://www.apple.com/pro/science/gilbert/index2.html

Best regards,
Hua



>From: "Michael Mayhew" <mayhew@cis.ohio-state.edu>
>Reply-To: guiblast-devel@bioinformatics.org
>To: <guiblast-devel@bioinformatics.org>
>Subject: Re: [Guiblast-devel] Assistance
>Date: Tue, 15 Jul 2003 07:38:56 -0400
>
>Sebastian,
>
>     I do not currently have copies of the latest source code. Would it be
>possible to send those to me via email, or does the project homepage have
>them for download?
>
>Michael
>
>_______________________________________________
>Guiblast-devel mailing list
>Guiblast-devel@bioinformatics.org
>https://bioinformatics.org/mailman/listinfo/guiblast-devel

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