[meltsim] RE: [SPAM] - meltsim Digest, Vol 3, Issue 2 - Bayesian Filter detected spam

[Monis, Paul]

Hi

Is the Unix port the same as the windows version in terms of the
parameters, etc used?  If not, can the Unix version be compiled to run
under linux?  I was also wondering if you have ever compared the
predictions of meltsim with other prediction tools such as the web-based
Poland service?

Thanks

Paul

Dr Paul Monis
Senior Research Microbiologist                    Adjunct Senior
Lecturer
Australian Water Quality Centre                   School of Pharmacy &
Medical Sciences
CRC for Water Quality and Treatment               Division of Health
Science
Private Mail Bag 3                                University of South
Australia
Salisbury SA 5108
Phone 61 8 8259 0312
FAX    61 8 8259 0228
www.awqc.com.au
 


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Today's Topics:

   1. Re: ANNOUNCE: 2.0 beta release! (R Blake)


----------------------------------------------------------------------

Message: 1
Date: Thu, 20 Oct 2005 19:17:39 -0400
From: R Blake <doug8829 at adelphia.net>
Subject: Re: [meltsim] ANNOUNCE: 2.0 beta release!
To: General discussions about meltsim <meltsim at bioinformatics.org>
Cc: Jonathan Blake <jonathan.blake at quinnipiac.edu>
Message-ID: <6.2.3.4.2.20051020191518.01fa0bf0 at mail.adelphia.net>
Content-Type: text/plain; charset=us-ascii; format=flowed;
	x-avg-checked=avg-ok-3B88945

Jeff,
Very nice effort. I will try it out. Keep me posted.
At 06:57 PM 10/19/2005, you wrote:

>Fellow melters,
>
>A lot of work has been done in recent months porting MeltSim from
>the Windows/GUI environment to Unix/CLI (command line), and I'm 
>happy to say that a public release is almost ready.  While this port 
>may seem like taking a step backwards to some (by eliminating the 
>desktop GUI), there are some distinct advantages to doing this:
>
>   - Placement of MeltSim into a pipeline or workflow
>   - Execution of MeltSim on a cluster or supercomputer
>   - Creation of a Web interface for MeltSim
>
>The port of MeltSim involved the following:
>
>   - Translation from Delphi/Pascal to full ANSI C99 with a CLI
>   - Inclusion of the "newer" 1998 empirical parameters***
>   - Use of more descriptive (and all lowercase) variable names
>   - Splitting the functions up into separate .c and .h files
>   - Addition of a Tm calculation function+++ and a CLI progress bar
>   - A couple bugs have also been found and fixed.
>
>***The 1995 parameters are still available (see the README file).
>+++The Windows version had the Tm function in the "Graph" tool.
>
>Note that the Graph tool won't be ported.  I prefer to use gnuplot 
>these days.
>
>I hope to port and update the "Compile" tool someday, but there are
>now many free tools that pretty much do the same thing.
>
>I'm making this announcement only on the MeltSim mailing list for
>now, since this is a beta release (numbered 1.99.0, meaning 
>2.0-beta1, as commonly done with open-source projects), and I would 
>like you guys to try it and test it first.  It's available here:
>
>   ftp://ftp.bioinformatics.org/pub/meltsim/meltsim-1.99.0.tar.gz
>
>Please let me know what you think and if you encounter any problems.
>
>And expect an announcement shortly about a Web interface!
>
>Cheers,
>Jeff
>--
>J.W. Bizzaro
>Bioinformatics Organization, Inc. (Bioinformatics.Org)
>E-mail: jeff at bioinformatics.org
>Phone:  +1 508 890 8600
>--
>_______________________________________________
>meltsim maillist  -  meltsim at bioinformatics.org 
>https://bioinformatics.org/mailman/listinfo/meltsim
>
>
>
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