[meltsim] RE: [SPAM] - meltsim Digest, Vol 3, Issue 2 - Bayesian Filter detected spam

Monis, Paul Paul.Monis at sawater.com.au
Sun Oct 23 19:16:26 EDT 2005


Is the Unix port the same as the windows version in terms of the
parameters, etc used?  If not, can the Unix version be compiled to run
under linux?  I was also wondering if you have ever compared the
predictions of meltsim with other prediction tools such as the web-based
Poland service?



Dr Paul Monis
Senior Research Microbiologist                    Adjunct Senior
Australian Water Quality Centre                   School of Pharmacy &
Medical Sciences
CRC for Water Quality and Treatment               Division of Health
Private Mail Bag 3                                University of South
Salisbury SA 5108
Phone 61 8 8259 0312
FAX    61 8 8259 0228

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Today's Topics:

   1. Re: ANNOUNCE: 2.0 beta release! (R Blake)


Message: 1
Date: Thu, 20 Oct 2005 19:17:39 -0400
From: R Blake <doug8829 at adelphia.net>
Subject: Re: [meltsim] ANNOUNCE: 2.0 beta release!
To: General discussions about meltsim <meltsim at bioinformatics.org>
Cc: Jonathan Blake <jonathan.blake at quinnipiac.edu>
Message-ID: < at mail.adelphia.net>
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Very nice effort. I will try it out. Keep me posted.
At 06:57 PM 10/19/2005, you wrote:

>Fellow melters,
>A lot of work has been done in recent months porting MeltSim from
>the Windows/GUI environment to Unix/CLI (command line), and I'm 
>happy to say that a public release is almost ready.  While this port 
>may seem like taking a step backwards to some (by eliminating the 
>desktop GUI), there are some distinct advantages to doing this:
>   - Placement of MeltSim into a pipeline or workflow
>   - Execution of MeltSim on a cluster or supercomputer
>   - Creation of a Web interface for MeltSim
>The port of MeltSim involved the following:
>   - Translation from Delphi/Pascal to full ANSI C99 with a CLI
>   - Inclusion of the "newer" 1998 empirical parameters***
>   - Use of more descriptive (and all lowercase) variable names
>   - Splitting the functions up into separate .c and .h files
>   - Addition of a Tm calculation function+++ and a CLI progress bar
>   - A couple bugs have also been found and fixed.
>***The 1995 parameters are still available (see the README file).
>+++The Windows version had the Tm function in the "Graph" tool.
>Note that the Graph tool won't be ported.  I prefer to use gnuplot 
>these days.
>I hope to port and update the "Compile" tool someday, but there are
>now many free tools that pretty much do the same thing.
>I'm making this announcement only on the MeltSim mailing list for
>now, since this is a beta release (numbered 1.99.0, meaning 
>2.0-beta1, as commonly done with open-source projects), and I would 
>like you guys to try it and test it first.  It's available here:
>   ftp://ftp.bioinformatics.org/pub/meltsim/meltsim-1.99.0.tar.gz
>Please let me know what you think and if you encounter any problems.
>And expect an announcement shortly about a Web interface!
>J.W. Bizzaro
>Bioinformatics Organization, Inc. (Bioinformatics.Org)
>E-mail: jeff at bioinformatics.org
>Phone:  +1 508 890 8600
>meltsim maillist  -  meltsim at bioinformatics.org 
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End of meltsim Digest, Vol 3, Issue 2

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