Hi Is the Unix port the same as the windows version in terms of the parameters, etc used? If not, can the Unix version be compiled to run under linux? I was also wondering if you have ever compared the predictions of meltsim with other prediction tools such as the web-based Poland service? Thanks Paul Dr Paul Monis Senior Research Microbiologist Adjunct Senior Lecturer Australian Water Quality Centre School of Pharmacy & Medical Sciences CRC for Water Quality and Treatment Division of Health Science Private Mail Bag 3 University of South Australia Salisbury SA 5108 Phone 61 8 8259 0312 FAX 61 8 8259 0228 www.awqc.com.au -----Original Message----- From: meltsim-bounces+paul.monis=sawater.com.au at bioinformatics.org [mailto:meltsim-bounces+paul.monis=sawater.com.au at bioinformatics.org] On Behalf Of meltsim-request at bioinformatics.org Sent: Saturday, 22 October 2005 1:31 AM To: meltsim at bioinformatics.org Subject: [SPAM] - meltsim Digest, Vol 3, Issue 2 - Bayesian Filter detected spam Send meltsim mailing list submissions to meltsim at bioinformatics.org To subscribe or unsubscribe via the World Wide Web, visit https://bioinformatics.org/mailman/listinfo/meltsim or, via email, send a message with subject or body 'help' to meltsim-request at bioinformatics.org You can reach the person managing the list at meltsim-owner at bioinformatics.org When replying, please edit your Subject line so it is more specific than "Re: Contents of meltsim digest..." Today's Topics: 1. Re: ANNOUNCE: 2.0 beta release! (R Blake) ---------------------------------------------------------------------- Message: 1 Date: Thu, 20 Oct 2005 19:17:39 -0400 From: R Blake <doug8829 at adelphia.net> Subject: Re: [meltsim] ANNOUNCE: 2.0 beta release! To: General discussions about meltsim <meltsim at bioinformatics.org> Cc: Jonathan Blake <jonathan.blake at quinnipiac.edu> Message-ID: <184.108.40.206.2.20051020191518.01fa0bf0 at mail.adelphia.net> Content-Type: text/plain; charset=us-ascii; format=flowed; x-avg-checked=avg-ok-3B88945 Jeff, Very nice effort. I will try it out. Keep me posted. At 06:57 PM 10/19/2005, you wrote: >Fellow melters, > >A lot of work has been done in recent months porting MeltSim from >the Windows/GUI environment to Unix/CLI (command line), and I'm >happy to say that a public release is almost ready. While this port >may seem like taking a step backwards to some (by eliminating the >desktop GUI), there are some distinct advantages to doing this: > > - Placement of MeltSim into a pipeline or workflow > - Execution of MeltSim on a cluster or supercomputer > - Creation of a Web interface for MeltSim > >The port of MeltSim involved the following: > > - Translation from Delphi/Pascal to full ANSI C99 with a CLI > - Inclusion of the "newer" 1998 empirical parameters*** > - Use of more descriptive (and all lowercase) variable names > - Splitting the functions up into separate .c and .h files > - Addition of a Tm calculation function+++ and a CLI progress bar > - A couple bugs have also been found and fixed. > >***The 1995 parameters are still available (see the README file). >+++The Windows version had the Tm function in the "Graph" tool. > >Note that the Graph tool won't be ported. I prefer to use gnuplot >these days. > >I hope to port and update the "Compile" tool someday, but there are >now many free tools that pretty much do the same thing. > >I'm making this announcement only on the MeltSim mailing list for >now, since this is a beta release (numbered 1.99.0, meaning >2.0-beta1, as commonly done with open-source projects), and I would >like you guys to try it and test it first. It's available here: > > ftp://ftp.bioinformatics.org/pub/meltsim/meltsim-1.99.0.tar.gz > >Please let me know what you think and if you encounter any problems. > >And expect an announcement shortly about a Web interface! > >Cheers, >Jeff >-- >J.W. Bizzaro >Bioinformatics Organization, Inc. (Bioinformatics.Org) >E-mail: jeff at bioinformatics.org >Phone: +1 508 890 8600 >-- >_______________________________________________ >meltsim maillist - meltsim at bioinformatics.org >https://bioinformatics.org/mailman/listinfo/meltsim > > > >-- >No virus found in this incoming message. >Checked by AVG Anti-Virus. >Version: 7.0.344 / Virus Database: 267.12.3/141 - Release Date: >10/18/2005 -- No virus found in this outgoing message. Checked by AVG Anti-Virus. Version: 7.0.344 / Virus Database: 267.12.3/141 - Release Date: 10/18/2005 ------------------------------ _______________________________________________ meltsim maillist - meltsim at bioinformatics.org https://bioinformatics.org/mailman/listinfo/meltsim End of meltsim Digest, Vol 3, Issue 2 ************************************* *******South Australian Water Corporation disclaimer******* "This e-mail and any attachments to it may be confidential and/or subject to legal professional privilege. 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